BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940355
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicas... 2684 0.0
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosp... 1943 0.0
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosp... 1238 0.0
> AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794457-2797660 FORWARD LENGTH=1887
Length=1887
Score = 2684 bits (1453), Expect = 0.0
Identities = 1642/1731 (95%), Gaps = 22/1731 (1%)
Strand=Plus/Plus
Query 1 TCTTTTCTCCTCTTGTTTCCATGAATTCCGATGGACCCAAATCCGGTAAGAAGAGACGAG 60
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TCTTTTCTCCACTCGTTGGCATGAATTCCGATGGACCCAAATCCGGTAAGAAGAGACGAG 123
Query 61 AGATTCGCGCTAAACATT-TGAAGAAGTTAACGAGTGACGAAGA----T-------G--A 106
||||||| ||||||| || |||||||||| |||||||||||||| | | |
Sbjct 124 AGATTCGTGCTAAAC-TTGTGAAGAAGTTGACGAGTGACGAAGATGGCTCGGGAAAGCTA 182
Query 107 --CAAGGACAACAATAAGGGTCTAAAGAGGGGAAGAGAAGGCAAATCTGATGTTGATGAG 164
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTCAAGGACAACAATAAGAGTCTAAAGAGGGGAAGAGAAGGCAAATCTGATGTTGATGAG 242
Query 165 CCTCTTATTAAGAAAGCAGCTTCTACTAAGCCTGTAGAT-TCTCAGATTGCTAAAACTTC 223
||||||||||||||| |||||||||||| |||| ||| | |||| ||||||||||||||
Sbjct 243 CCTCTTATTAAGAAACCAGCTTCTACTACGCCTCTAG-TGACTCAAATTGCTAAAACTTC 301
Query 224 AGATTCTTACTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTATCGCTAAA 283
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 302 AGATTCTTATTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTAACGTTAAA 361
Query 284 AGGAATTGTGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 343
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 421
Query 344 CATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTGC 403
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 422 CATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAAACAGTTGC 481
Query 404 TTTTTTGCTTCCATCAATTGAAGCTGTTATCAAATCTCCTCCTGCAAGCCGGGATAATAG 463
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 482 ATTTTTGCTTCCATCAATTGAAGCTGTTATCAAAGCTCCTCCTGCAAGCCGTGATAATAG 541
Query 464 GCATCCCCCAATTATTGTCCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGCTGC 523
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGCTGC 601
Query 524 TGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTGG 583
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTGG 661
Query 584 AGGCACAAAGCTTCCTACAGAGCAAAGGCGCTTGCAAAAGAGTCCATGCCAGATTCTCGT 643
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AGGCACTAAGCTTCCTACGGAGCAAAGGCGCTTGCAAAAGAGTCCTTGCCAGATTCTCGT 721
Query 644 GGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAACAAGGTT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAACAAGGTT 781
Query 704 GATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTGGACATGGGTTTCCG 763
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 782 GATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGGTTTCCG 841
Query 764 AAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACCTTTTTATTTTC 823
|||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 842 AAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATTTTTATTTTC 901
Query 824 CGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATGTTGCTCTGAAACGGGATCATGA 883
|||||| ||| |||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 CGCCACAGTATCTGATGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACGGGATCATGA 961
Query 884 ATTCGTCAATTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTCTCACAAATGTA 943
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 962 ATTCGTCAACTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTTTCACAAATGTA 1021
Query 944 CATGATTGCATCATTAGATAGACATTTCTCGCTTCTTTATGGTCTTCTGAAAAAACACAT 1003
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1022 CATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGTCTTCTGAAAAAACACAT 1081
Query 1004 CGCAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGGTTACAAGATT 1063
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGGTTACAAGATT 1141
Query 1064 GGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCATTCTAGAAAACC 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCATTCTAGAAAACC 1201
Query 1124 ACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCTAAGAGTATTATCCTTGT 1183
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1202 GCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAGTATTATCCTTGT 1261
Query 1184 AACATCCGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCACT-AGTCGTGCAGA 1242
||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1262 GACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTC-CTTAGTCGTACAGA 1320
Query 1243 TGGGATTGCCATCAGACAGGGAACAATATATCCATAGACTTGGCAGAACTGGGCGGAAAG 1302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1321 TGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAACTGGGCGGAAAG 1380
Query 1303 GTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTATTTTCTATCTTCTG 1362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1381 GTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACTTTCTATCTTCTG 1440
Query 1363 TTAAAGACTTGCCCATCACAAAGTCGTCTTTACCGCCAATTGATCATGAGGCTGTGAAAA 1422
|||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1441 TTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACCATGAGGCTGTGAAAA 1500
Query 1423 AGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACAAACAAAGAGGCGGCATATCAGGCCT 1482
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1501 AGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACGAACAAGGAGGCGGCATATCAGGCAT 1560
Query 1483 GGTTGGGTTACTACAAATCTCAGAAGAAGATTGCAAGAGACACGACCAGACTGGTGGAGT 1542
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1561 GGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACACGACCAGACTGGTGGAGT 1620
Query 1543 TAGCCAATGAGTTTAGCCGCAGCATGGGACTTAGTATCCCTCCAGCTATCCCTATAAATG 1602
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||
Sbjct 1621 TAGCTAATGAGTTTAGCCGCAGTATGGGACTTAGCATCCCTCCGGCTATCCCTGTAAATA 1680
Query 1603 TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGAGTCGCTCCAGGTTTTGACA 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGAGTCGCTCCAGGTTTTGACA 1740
Query 1663 AGAAACATACAAAGAGAAATAATCGTTCCCGCTAGACttttttcttttttt 1713
|||||| | ||||||||||| ||||||||||||||| |||| ||||| |||
Sbjct 1741 AGAAACCTGCAAAGAGAAATTATCGTTCCCGCTAGA-TTTTCTCTTTCTTT 1790
> AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790295-2794215
FORWARD LENGTH=2755
Length=2755
Score = 1943 bits (1052), Expect = 0.0
Identities = 1363/1510 (90%), Gaps = 33/1510 (2%)
Strand=Plus/Plus
Query 158 TGATGAGCCTCTTATTAAGAAAGCAGCTTCTACTAAGCCTG-T-AGA-TTCTCAG---A- 210
|||||||||||||||||||||||| |||||| ||||| ||| | ||| | | || |
Sbjct 1090 TGATGAGCCTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAAC 1149
Query 211 T--TG--C---T-AAAACTTCAGATTCTTACTTGTCAAAGACAAGATTTGATCAGTTCCC 262
| || | | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1150 TGGTGAACATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCC 1209
Query 263 ACTGTCTCCCTTATCGCTAAAAGGAATTGTGGATGCTGGATTTAAGACAATGACTGTTGT 322
||| ||||||||||||||||||| || |||||| |||||| ||||||||||||||||
Sbjct 1210 ACTCTCTCCCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGT 1269
Query 323 TCAGGAGGCTACTCTTCCTCTCATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAAC 382
|||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 1270 GCAGGAGGCTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAAC 1329
Query 383 AGGCACTGGGAAAACCGTTGCTTTTTTGCTTCCATCAATTGAAGCTGTTATCAAATCTCC 442
||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1330 AGGCACTGGTAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCC 1389
Query 443 TCCTGCAAGCCGGGATAATAGGCATCCCCCAATTATTGTCCTTGTGGTATGTCCTACTCG 502
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1390 TCCTGCAAGCCGGGATAGTAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCG 1449
Query 503 GGAACTTGCTTGTCAAGCTGCTGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTAT 562
||||||||| |||||||||| ||||||||||| | ||| || ||||||||||| |||||
Sbjct 1450 GGAACTTGCCAGTCAAGCTGCGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTAT 1509
Query 563 TGGTGTTCAAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCGCT-TGCAAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1510 TGGTGTTCAAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCG-TATGCAAA 1568
Query 622 AGAGTCCATGCCAGATTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACA 681
|| ||| |||||||| || ||||||||||| |||||||||||||||||||| || ||||
Sbjct 1569 CGAATCCTTGCCAGATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACA 1628
Query 682 CTTCTGGATTTGCAACAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATC 741
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1629 CTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATC 1688
Query 742 ATCTTTTGGACATGGGTTTCCGAAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGC 801
|||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||
Sbjct 1689 ATCTCTTGGACATGGGTTTCCGAAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGC 1748
Query 802 AGAGACAAACCTTTTTATTTTCCGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATG 861
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct 1749 AGAGACAAACATTTTTATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCCATG 1808
Query 862 TTGCTCTGAAACGGGATCATGAATTCGTCAATTGTGTTCAAGAGGG-TGCTGGGGAGACG 920
|||||||||||||||||||||| ||| |||||||||| |||||||| | ||||||||||
Sbjct 1809 TTGCTCTGAAACGGGATCATGAGTTCATCAATTGTGTCCAAGAGGGCT-CTGGGGAGACA 1867
Query 921 CATCAAAAGGTCTCACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTT 980
|||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1868 CATCAAAAGGTCACACAAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCTA 1927
Query 981 TATG-GTCTTCTGAAAAAACACATCGCAGATAATGTGGGCTATAAGGTTATTATTTTCTG 1039
||| | ||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1928 CATGTG-CTTCTTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTG 1986
Query 1040 TACAACTGCTATGGTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGT 1099
||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1987 TACAACTGCTATGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAGCCTGAACGT 2046
Query 1100 CAGAGAGATCCATTCTAGAAAACCACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCG 1159
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2047 CAGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCG 2106
Query 1160 CAAGTCTAAGAG-TATTATCCTTGTAACATCCGATGTATCTGCTCGTGGTGTTGATTACC 1218
|||||| ||| | ||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 2107 CAAGTCCAAG-GCTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACC 2165
Query 1219 CTGATGTGTCACTAGTCGTGCAGATGGGATTGCCATCAGACAGGGAACAATATATCCATA 1278
||||||||||| | ||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 2166 CTGATGTGTCATTGGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATA 2225
Query 1279 GACTTGGCAGAACTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACT-ATTGTTGGCACCG 1337
||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||||
Sbjct 2226 GACTTGGCAGAACCGGGCGGAAAGGGAAGGAAGGGGAAGGAGT-CTTATTGTTGGCACCA 2284
Query 1338 TGGGAAGAGTATTTTCTATCTTCTGTTAAAGACTTGCCCATCACAAAGTCGTCTT-TACC 1396
||||||||||| ||| | || ||||||||||||||||||||||| ||||| || ||||
Sbjct 2285 TGGGAAGAGTACTTTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTC-TCCACTACC 2343
Query 1397 GCCAATTGATC-ATGAGGCTGTGAAAAAGGTGCAGAAAGGGCTTATCCAAGTGGAAATGA 1455
|||||| || | | ||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 2344 GCCAATAGACCCA-GAGGCTGTGAAAAGGGTGCAGAAAGGGCTGAGCCAAGTGGAAATGA 2402
Query 1456 CA-AACAAAGAGGCGGCATATCAGGCCTGGTTGGGTTACTACAAATCTCAGAAGAAGATT 1514
| ||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 2403 -AGAACAAGGAGGCGGCGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATT 2461
Query 1515 GCAAGAGACACGACCAGACTGGTGGAGTTAGCCAATGAGTTTAGCCGCAGCATGGGACTT 1574
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2462 GCAAGAGACACGACCAGACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTT 2521
Query 1575 -AGTATCCCTCCAGCTATCCCTATAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCC 1633
| | ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2522 GAC-AGCCCACCAGCTATCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCC 2580
Query 1634 TGGTATTAGA 1643
|||| |||||
Sbjct 2581 TGGTCTTAGA 2590
> AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476511
REVERSE LENGTH=2476
Length=2476
Score = 1238 bits (670), Expect = 0.0
Identities = 1193/1443 (83%), Gaps = 46/1443 (3%)
Strand=Plus/Plus
Query 225 GATTCTTACTTGTCAAAGACAAGATTTGATCAGT-TCCCACTGTCTCCCTTATCGCTAAA 283
|||||||| ||| | ||||||||||||||||| | | ||| |||||||||||||||| ||
Sbjct 1049 GATTCTTATTTGACTAAGACAAGATTTGATCACTAT-CCATTGTCTCCCTTATCGCT-AA 1106
Query 284 AGG-AATTGTGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTC 342
||| ||| ||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 1107 AGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTA 1166
Query 343 TCATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTG 402
| |||||| |||| || ||| |||| || |||||||||||||| ||||||||||| || |
Sbjct 1167 TAATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAG 1226
Query 403 CTTTTTTGCTTCCATCAATTGAAGCT-GTTATCAAATCTCCTCCTGCAAGCCGGGATAAT 461
| |||||||||||||||||||||| | ||| |||||||||||||| |||||| |||||||
Sbjct 1227 CGTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAAT 1285
Query 462 AGGC-ATCCCCCAATTATTGTC-CTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAG 519
| || | |||||||| ||| | |||||| |||| |||||| | |||||||| |||||
Sbjct 1286 AAGCGA-CCCCCAATCCTTG-CGCTTGTGATATGCCCTACTAGAGAACTTGCCAATCAAG 1343
Query 520 CTGCTGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGA 579
||||| |||| ||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 1344 CTGCTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGA 1403
Query 580 TTGGAGGCACAAAG-CTTCCTACAGAGCAAAGGCGCT-TGCAAA-AGAGTCCATGCCAGA 636
||||||| || || ||| | |||||||| ||| | |||||| | | ||| |||||||
Sbjct 1404 TTGGAGGTAC-GAGACTTGGTTTAGAGCAAAAGCG-TATGCAAACA-AATCCTTGCCAGA 1460
Query 637 TTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAA 696
|| | ||||||||||| ||||||||||||||||||||||| ||||| | || |||||||
Sbjct 1461 TTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAA 1520
Query 697 CAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTGGACATGG 756
| ||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1521 CGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGATATGG 1580
Query 757 G-TTTC-CGAAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACCTT 814
| |||| | |||| | |||||||||||||| | ||||| |||||| |||||||||| ||
Sbjct 1581 GCTTTCGC-AAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TT 1637
Query 815 TT-TATTTTCCGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATGTTGCTCTGAAA- 872
|| ||||||||||||| ||||||||||| || |||||||| |||| ||||||||| ||
Sbjct 1638 TTCTATTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTTGTTGCTCT-AAGG 1696
Query 873 CGGGATCATGAATTCGTCAATTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTC 932
|||||||| || || |||||||||||||| || || || |||||||||||| |||||
Sbjct 1697 CGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTC 1756
Query 933 TCACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTTTATGGTCTTCTG 992
||||||| |||||||||||||| | || ||||||||||| ||||| || |||||
Sbjct 1757 AGACAAATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTGTACACACTTCTT 1816
Query 993 AAAAAACACATCGCAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATG 1052
||||||| | ||| || | ||||||||| ||| | ||||||||||| || |||
Sbjct 1817 CGCGAACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGTACAACGGCCATG 1876
Query 1053 GTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAA-CGTCAGAGAGATCCA 1111
||||||| ||| ||||||||||| |||||| |||||| | |||| ||| |||||||||||
Sbjct 1877 GTTACAAAATTAGTGGCTGATCTACTTGGTGAGCTAAAC-TTAAACGTGAGAGAGATCCA 1935
Query 1112 TTCTAGAAAACCACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCTAAGAG 1171
|||||||||||| ||||||||||| || || |||||| | |||||||| || || ||| |
Sbjct 1936 TTCTAGAAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGAAAATCCAAGGG 1995
Query 1172 TATT-ATCCTTGTAACATCCGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCAC 1230
| || || || |||||||| |||||||||||||| || |||||||||||||||||| | |
Sbjct 1996 T-TTGATTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCTGATGTGACCC 2054
Query 1231 TAGTCGTGCAGATGGGATTGCCATCAGACAGGGAACAATATATCCATAGACTTGGCAGAA 1290
| || | ||| | ||||||||| |||||| ||||||||||| || |||||||| ||||
Sbjct 2055 TTGTTTTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAA 2114
Query 1291 CTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTATT 1350
| ||||| ||||| |||||||||||||| || | ||||||||||| ||||| || || |
Sbjct 2115 CCGGGCGAAAAGGAAAGGAAGGAGAAGGCATATTGTTGTTGGCACCATGGGAGGAATACT 2174
Query 1351 TTCTATCTTCTGTTAAAGACTTGCCCATCACAAAGTCGTCTT-TACCGCCAATTGATC-A 1408
||||||| ||| ||||||| || |||||||| ||||| || | | || |||| || | |
Sbjct 2175 TTCTATCATCTCTTAAAGATTTACCCATCACTAAGTC-TCCTCTGCCATCAATAGACCCA 2233
Query 1409 TGAGGCTGTGAAAAAGGTGCAGAAAGG-GCTTAT-CCAAGTGGAAATGACAAACAAAGAG 1466
|| |||| ||||||||||| ||||| |||| | ||| || || |||| |||||||||
Sbjct 2234 -GAAACTGTAAAAAAGGTGCA-AAAGGCGCTT-TGCCATGTCGAGATGAGGAACAAAGAG 2290
Query 1467 GCGGCATATCAGGCCTGGTTGGGTTACTACAAATCTCAGAAGAAGATTGCAAGAGACAC- 1525
||||| |||||||| ||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 2291 GCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAA 2350
Query 1526 GACCAGACTGGTGGAGTTAGCCAATGAGTTTAGCCGCAGCATGGGACTT-AGTATCCCTC 1584
||| || || |||||||| || || |||||||| || || ||||||||| | |||| ||
Sbjct 2351 GAC-AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCC-TC 2408
Query 1585 CAGCTATCCCTATAAA-TGT-TC-TTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTA 1641
||||||| || | ||| | | || |||| ||||||||||||||||| ||||||||| |||
Sbjct 2409 CAGCTATACC-A-AAACT-TATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTTA 2465
Query 1642 GAG 1644
|||
Sbjct 2466 GAG 2468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5