BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940356
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08630.1 | Symbols: | DDT domain-containing protein | chr5:... 3683 0.0
> AT5G08630.1 | Symbols: | DDT domain-containing protein | chr5:2798281-2803171
REVERSE LENGTH=2672
Length=2672
Score = 3683 bits (1994), Expect = 0.0
Identities = 2139/2210 (97%), Gaps = 5/2210 (0%)
Strand=Plus/Plus
Query 4 GTTTTGCCATTTGAAGGATGCCTCTACTAAAAAAGAAGTCACATAAACTACTGGAGCCCC 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GTTTTGCCATTTGAAGGATGCCTCTACTAAAAAAGAAGTCACATAAACTACTGGAGCCCC 249
Query 64 CAAAGAACTTGGAGCCTCAAGAACTTGTCTATCAAGTTCGTCTAACAAAGGAGATCTTTC 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 CAAAGAACTTGGAGCCTCAAGAACTTGTCTATCAAGTTCGTCTAACAAATGAGATCTTTC 309
Query 124 GAGATTATCAATTGTACTTGAAGAGGATAAATCTGTATCGCAACCGAGTTTGGACATGTA 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 310 GAGATTATCAATTGTACTTGAAGAGGTTAAATCTGTATCGCAACCGAGTTTGGACTTGTA 369
Query 184 AGTCTACTGGTAAAACTAGCTTGAGCTACGAGGAGGCCTTAGATTCAGAAAAACTGGCAA 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AGTCTACTGGTAAAACTAGCTTGAGCTACGAGGAGGCCTTAGATTCAGAAAAACTGGCAG 429
Query 244 GCAAGAAGGTTCAAACTCTGCCCAGAGAGCTAGTTGCACCTGCTTTACGCATCATCCAAT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCAAGAAGGTTCAAACTCTGCCCAGAGAGCTAGTTGCACCTGCTTTACGCATCATCCAAT 489
Query 304 TCAGTACGCTCTCATTGAAAGATCTTGCTAACAAAATAGCGACAGAGTTGCAAAATTGCT 363
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 490 TCAGTACGCTTTCATTGAAAGATCTTGCTGACAAAATAGCGACAGAGTTGCAAGATTGCT 549
Query 364 TTTTCGCTGGCGCAGAGTTGTATGGGAAAAGGGATGAGGAACTGCATCCTTGCAAAATCT 423
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 550 TTTTCCCTGGCGCAGAGTTGTATGGGGAAAGGGATGGGGAACTGCATCCTTGCAAAATCT 609
Query 424 TGAGGATAGTAACAGATGGGGATAGTAAACCTCAGTATGAGGTAGGCTTCCTTGACAAAG 483
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TGAGGATAGTATCAGATGGGGATAGTAAACCTCAGTATGAGGTAGGCTTCCTTGACAAAA 669
Query 484 ACAAGGAAATAAATGAGAACACAGTGCTCTTTGGGGAGGATCTGTCATGGAAGAAGTTTC 543
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACAAGGAAGTAGATGATAACACAGTGCTCTTTGGGGAGGATCTGTCATGGAAGAAGTTTC 729
Query 544 CATTTAGTAGAAATTTTCTGAAGTCTTTCATTCGGGATTCCACATGCCACAGTATACCTT 603
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 730 CATTTAGTAGAAATTTTCTGAAGTCCTTCATTCGAGATTCCACATGCCACAGTATACCTT 789
Query 604 GGGTAGTAAATGATTACCTGGCTAAAGCACATGAAATCACGAGAAAGATTCCCAAGGAAC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GGGTAGTAAATGATTACCTGGCTAAAGCACATGAAATCACGAGAAAGATTCCCAAGGAAC 849
Query 664 TTCAGAACAAATATGTCTTTCAGAATGGAGAACTGGTTCAACaaaggaagcaggaagata 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TTCAGAACAAATATGTCTTTCAGAATGGAGAACTGGTTCAACAAAGGAAGCAGGAAGATA 909
Query 724 aaaccggaagggaaaa-aggaaaaagaaagagagcagaaaaTGGTAAACATGTTGCAGAG 782
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AAACCGGAAGGGAAAATAG-AAAAAGAAAGAGAGCAGAAAATGGTAAACATGTTGCAGAG 968
Query 783 GAGACAGATAGAGAGGTTAATGGTTCCGAGGAAGAGGCTATCAATTACCCAATCGAAGAT 842
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 969 GAGACAGATAGAGAGGTTAATGGGTCTGAGGAAGAGGCTATCAATTACCCAATCGAAGAT 1028
Query 843 TTACTGTTGCCACCTGATCCTGATGTCACTCAGCGTCCTTCTCCTTCGCGGGATTTTAGT 902
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1029 TTACTTTTGCCACCTGATCCTGATGTCACTCAGCGTCCTTCTCCTTCCCGGGATTTTAGT 1088
Query 903 GTTCCAATGGATTGTGTTGGGGATCTTCTTATGGTCTGGGACTTTTGTACCTCATTTGGT 962
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GTTCCTATGGATTGTGTTGGGGATCTTCTTATGGTCTGGGACTTTTGTACCTCATTTGGT 1148
Query 963 AGGCAGCTGCATCTATGGAGATTTTCTCTTGAAGACTTTGAAAATGCTGTCTGCCACAAG 1022
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGGCAGCTGCATCTATGGCGATTTTCTCTTGAAGACTTTGAAAATGCTGTCTGCCACAAG 1208
Query 1023 GAGAGTAATTTGGTTCTGATCATGGAAGTGCATGCCTGTCTTTTTCGGTTCCTCATCAAT 1082
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1209 GAGAGTAATTTGGTTCTTATCATGGAAGTGCATGCCTCTCTTTTTCGGTTCCTCATCAAT 1268
Query 1083 GAACGTGGTGATAGTTTCAAAACTTTACAGAGAAGGAGTCGCAAGTCAAAGATAACATTG 1142
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1269 GAACGTGGTGATAGTTTCAAAGCTTTACAGAGAAGGAGTCGCAAGTCGAAGATAACATTG 1328
Query 1143 ATCACATGGGCAGAGTATCTTTGTGATTTCTTGGAATCAGTCAACACTCCTGATTTGTGC 1202
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1329 ATCACGTGGGCAGAGTATCTTTGTGATTTCCTGGAATCAGTCAACACTCCTGATTTGTGC 1388
Query 1203 TTCGACGTTGGAACGATCAAACGTGGACATTATGGTCTATTGGACCCAAATGTAAAATTG 1262
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1389 TTCGATGTTGGAACGATCAAACGTGGACATTATGGTCTCTTGGACCCAAATGTAAAATTG 1448
Query 1263 AAAATCTTAAGGGAATTAGTGAACCATATAACTGAAACAAGTATGTTCAAGGGGGAAATA 1322
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1449 AAAATCTTAAGGGAATTAGTGAACCATATAACCGAAACAGGTATGTTCAAGGGGGAAATA 1508
Query 1323 GATGAGCTTGTTGAACAACGGCATGCCCTTGGAGCTGCTAGAAGAGAAGAAGCATTGGCG 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GATGAGCTTGTTGAACAACGGCATGCCCTTGGAGCTGCTAGAAGAGAAGAAGCATTGGCG 1568
Query 1383 GAGGCCCGACAGATAAGAGAGGAGAAAGAACGGTCCAAAACTGGCGAGGAAGCTAATGGA 1442
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1569 GAGGCCCGACAGATAAGAGAGGAGAAAGAACGGTCCAAAACTGGTGAGGAAGCTAATGGA 1628
Query 1443 TTTTTAGACAATAATAGGTTGGAGAAAAAGAAAAACAGCCCACCAGTATTAGAAAGCAGT 1502
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1629 GTTTTAGACAATAATAGGTTGGAGAAAAAGAAAAATAGCGCACAAGTATTAGAAAGCAGT 1688
Query 1503 GAAGACAGCAAAAAGAATGAGAGCACTGCAGGGGGAAGCAAGATGGAGAATGGGTCTGTT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 GAAGACAGCAAAAAGAATGAGAGCACTGCAGGGGGAAGCAAGATGGAGAATGGGTCTGTT 1748
Query 1563 TCTTCGGAAAAAATTGAAAAATCAGAGAAAAGGCTTATGGGGAATGTCTATCTGAGAAAG 1622
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1749 TCTTCGGAAAACATTGAAAAATCAGAGAAAAGGCTTATAGGGAATGTCTATCTGAGAAAG 1808
Query 1623 CACAAAAGGCAGATGATGGATACAAAAATCGAACCTAaagagga--ag-atgatgaggag 1679
|||||||||||||||| |||||||||||||||||| |||||||| || | |||||| |
Sbjct 1809 CACAAAAGGCAGATGACGGATACAAAAATCGAACCAAAAGAGGAGGAGGAGGATGAGAAA 1868
Query 1680 gcggaggaggaagaagaggagaaaggaTTTTCGGTGAAGAAGCAGGAGGTAAAATCAGCA 1739
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1869 GCAGAGGAGGACGAAGAGGAGAAAGGATTTTCAGTGAAGAAGCAGGAGGTAAAATCTGCA 1928
Query 1740 AGCGAAGATGAGAAAGGAACTTCAGAAAGGAGGGGGCCCGAACAGAGGAGGCAATATTAT 1799
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1929 AGCGAAGATGAGAAAGGAACTTTTGAAAGGAGGGGGCCCGAACAGAGGAGGCAATATTAT 1988
Query 1800 GAACGAGAGATGGAGAAAATAGTCATACGTACAAACCCCTTGGGTAAAGATCGGGATTAC 1859
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1989 GAGCGGGAGATGGAGAAAATAGTCATACGTACAAACCCCTTGGGTAAAGATCGGGACTAC 2048
Query 1860 AACAGGTACTGGTGGTTCCGAAGCAATGGAAGGATATTTGTTGAGGATTCTGATTCCAAA 1919
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||
Sbjct 2049 AACAGGTACTGGTGGTTCCGAAGCAATGGGAGAATATTTGTTGAGAATTCTGATTCCGAA 2108
Query 1920 GAATGGGGTTATTATACCTCCAAGGAAGAGCTCGATGCATTGATGGGATCACTAAACCGT 1979
|||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2109 GAATGGGGCTATTATACCGCCAAGGAAGAGCTGGATGCATTGATGGGGTCACTAAACCGT 2168
Query 1980 AAAGGAGAGAGGGAACTGTCATTACATACACAGCTAGAGACATTCTATGACAGAATATGC 2039
|||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 2169 AAAGGAGAGAGGGAACTGTCATTATATACACAACTAGAGATATTCTATGACAGAATATGC 2228
Query 2040 TCTACACTACAAAAGAGGACGAAGGACATTGCTCACAACATAGAAATGGAAGAAGCAGTG 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 TCTACACTACAAAAGAGGACGAAGGACATTGCTCACAACATAGAAATGGAAGAAGCAGTG 2288
Query 2100 GTTAGGAGATCTACCCGTGTAAGAGCTCCACTTCATGAAAATCCAGCTAGTGCCTTCTTG 2159
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2289 GTTAGGAGATCTACCCGTGTAAGAGCTCCACTACATGAAAATCCAGCTAGTGCCTTCTTG 2348
Query 2160 AGATATGTTAACAAGTGGAAAGAGGACTAAACGTAGCAGAATTCAATTCT 2209
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 AGATATGTTAACAAGTGGAAAGAGGACTAAACGTAGCAGAATTCAATTCT 2398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109587789735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5