BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940367
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2... 2566 0.0
> AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848506-2851428
REVERSE LENGTH=1911
Length=1911
Score = 2566 bits (1389), Expect = 0.0
Identities = 1535/1607 (96%), Gaps = 4/1607 (0%)
Strand=Plus/Plus
Query 1 TTCCGGCGATAT-TCAAAGTCAACAATGGCCGTTCTCTCCTCCGTATCTTCTCTCTTACC 59
|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 82 TTCCGGCGATATAT-AAAGTCAGCAATGGCCGTTCTCTCCTCTGTATCTTCTCTCATACC 140
Query 60 CTTCTCTTATGGGGCAAAGAGACTGACTAGTAAAGCTTCTTTAGCTTCAAGAACTTCTGG 119
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 141 CTTCTCTTATGGGGCAACGAGACTGACTAGTAAAGCTTCATTAGCCTCAAGAACTTCCGG 200
Query 120 ATTCAATCTCTCTTCTCGTTGGCACTCAACGAGAAGCGCCCCTAGGTTGTATCTTTCGAG 179
|||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||
Sbjct 201 ATTCAATCTCTCTTCTCGTTGGAACTCAACGAGAAACTCCCCTATGTTGTATCTTTCGAG 260
Query 180 GGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGAGAATGAAACAGCTCCAAGGAC 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 261 AGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGATAATGAAACAGCTCCAAGGAC 320
Query 240 TTACACATGGCCTGATAACAAGAGACCAAGGGTGTGTATTCTAGGTGGTGGGTTTGGAGG 299
|||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 321 TTACTCATGGCCTGATAACAAGAGGCCAAGGGTGTGCATTCTAGGTGGTGGCTTTGGAGG 380
Query 300 ATTGTACACAGCTTTGAGATTAGAATCGCTTGTGTGGCCTGAAGACAAAAAACCTCAGGT 359
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 381 ATTGTACACAGCTTTGAGATTAGAATCTCTTGTTTGGCCTGAAGACAAAAAGCCTCAGGT 440
Query 360 TGTTCTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCGATGTTGTATGAACTTCTCTC 419
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 441 GGTTTTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTC 500
Query 420 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTACTTACAAACACGGG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 501 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGG 560
Query 480 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 561 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTTAA 620
Query 540 TGGGTCTGAAAGTTCTGTTACTGGAGGAACTGTCTTGCTCGAAAGCGGTTTTAAAATTGA 599
||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 621 TGGGTCTGAGATTTCTGTTACTGGAGGAACCGTCTTGCTCGAAAGCGGTTTTAAAATCGA 680
Query 600 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGCGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 681 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGC 740
Query 660 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCTATTAGAGTTAACAAAAAGCT 719
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 741 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTAGGGTTAACGAAAAGCT 800
Query 720 GAGTAAATTGGAGAGGAAGAATTTCAAAGACGGCTCTGCCATAAAAGTGGCTGTTGTTGG 779
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 801 GAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGG 860
Query 780 GTGCGGATATGCAGGAGTTGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 839
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CTGCGGTTATGCAGGAGTAGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 920
Query 840 AATAGTGCAGTCCATTAACGTATCAAAGGATATACTAACATCAGCCCCTAATGGGAACAG 899
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 921 AATAGTGCAGTCCATTAACGTATCAAAGAATATACTAACATCAGCCCCTGATGGGAACAG 980
Query 900 GGAGGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTTTTGGGTTATCTGGT 959
|| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 981 AGAAGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTCTTAGGTTATCTTGT 1040
Query 960 TCAATCCATAAAGAGAGCAAGCGA-CTCAGAAGAAGATGAAGGATATTTGTTAGAGCTTC 1018
|||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||
Sbjct 1041 TCAATCCATAAAGAGAGCAAGCAACCT-AGAAGAAGATGAAGGATATTTTTTAGAGCTTC 1099
Query 1019 AGCCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1078
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AACCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1159
Query 1079 TCGGTTCTAAGCCTTTGCTTACCAAACTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1138
| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1160 TTGGTGCTAAGCCTTTGCTTACTAAATTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1219
Query 1139 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATTT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1220 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATAT 1279
Query 1199 TTGCATTAGGTGATTCTTCTTCTCTAAGAGACTCAAATGGAAAGCTTCTTCCTACAACAG 1258
|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1280 TTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAG 1339
Query 1259 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATTTGGGCAGCCATAAATA 1318
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1340 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATAAATA 1399
Query 1319 ACCGACCGTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1378
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 ACCGACCTTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1459
Query 1379 ATGATGCTGCTATTTCGCCAAGTTTCATTGAAGGGCTTACTCTTGAAGGTCCAATTGGCC 1438
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1460 ATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTC 1519
Query 1439 ACGCAGCAAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTAAGG 1498
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1520 ACGCAGCGAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTATGG 1579
Query 1499 TCGGAATCAGTTGGTTTGCTAAATCTGCTGTTGACTCAATTGCTTTACTTCAGAGCAATC 1558
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1580 TCAGAATCAGTTGGTTTGCTAAATCTGCTGTTGATTCAATTGCTTTACTTCAGAGCAATC 1639
Query 1559 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1605
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5