BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940370
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08770.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1328 0.0
> AT5G08770.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2855638-2856540
REVERSE LENGTH=903
Length=903
Score = 1328 bits (719), Expect = 0.0
Identities = 847/908 (93%), Gaps = 12/908 (1%)
Strand=Plus/Plus
Query 12 AAATCGGAAAATGCTTCCACTAAAGCTTGCTCGATCTCTTCTTCTCCACGAGACTCTCGA 71
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAATCGG-AAATGCTTCCATTAAAGCTTGCTCGATCTCTTCTTCTCCACGAGACTCTCAA 59
Query 72 TCTCACTCACAATCCCGGCGATACAGACGACGGCGATGAAGACGGAGAAACCAGTATCCG 131
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TCTCACTCATAATTCCGGCGATACAGACGACGTTGATGAAGACGGAGAAACCAGTATCCG 119
Query 132 GCAAA-TCTTAAGCTCCTACAAGCAATCAAAAACCCGATCGAGATCCGAT---AAC-A-A 185
||||| || ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 120 GCAAATTC-TAAGCTCCTACAAGCAATCAAAAACCCGATCGAGATCCGATAACAACAAGA 178
Query 186 -GAGAAATTCGAAAATCCCATTGCTCTACTTCGTTCCAACACGAGAATTGATCTCAGATA 244
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CGAGAAATTCGAAAACCCCATTGCTATACTTCGTTCCAACACGAGAATTGATCTCAGATA 238
Query 245 CATACCGATTAGCCACAATCGCGAGAGATCTAGGTATGGATTTGTACCCAACACCATCGC 304
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct 239 CATACCGATTAGCAACAATCGGGAGAGATCTAGGTATGGATATGTACCCAACACCATCAC 298
Query 305 TCTCTCACATTATCTTCTCATTCCCGTCGCGAGAATCGAAATCGCCGTCGCCTTTCTCTT 364
|||||||||| |||||||||||||| |||| |||||| ||||||||||| ||||||||||
Sbjct 299 TCTCTCACATCATCTTCTCATTCCCATCGCCAGAATCAAAATCGCCGTCACCTTTCTCTT 358
Query 365 CATCGTCGCATCCTTCGACGTGGTCGTCTTCGGCTTCGCTATCGTCGTCTCTCTCGTGGT 424
| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 CTTCATCGCATCCTTCGACATGGTCGTCTTCTGCTTCGCTATCGTCGTCTCTCTCGTGGT 418
Query 425 CTCTTCCAAACGACGCCGTAATGctctcattcccatctctctccgcctcatcactctccc 484
||||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||| |
Sbjct 419 CTCTTCCTAACGACGCCGTAATGCTCTCCTTCCCGTCTCTCTCTGCCTCATCGCTCTCTC 478
Query 485 atctccgatccttcgtctccctctccaacggtctctTCAAACTCGTCTTCTCCGCCACCA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 ATCTCCGATCCTTCGTCTCCCTCTCCAACGGTCTCTTCAAACTCGTCTTCTCCGCAACCA 538
Query 545 CCGTAGAGACATCTTCCTCTTCCTCATCCGGATCCGTTAGCAATTGGGATTGCTGCTCCG 604
||||||| |||||| |||||| | | |||||||| |||||||| ||||| ||||||||||
Sbjct 539 CCGTAGAAACATCTCCCTCTT-C-C-TCCGGATCTGTTAGCAACTGGGACTGCTGCTCCG 595
Query 605 TTTCTCTCTTCTCAAGAATCGCCAACAAGCGAATCGGATCAATGGAGAGTTTCTCGAATG 664
|||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 596 TTTCACTCTTCTCAAAAATCGCCAACAAGCGAATCGGATCGATGGAGAGTTTTTCGAATG 655
Query 665 CATTGGCTTCGAAAGGATGGACAATTTACAAGACGAAAGAGAATCCGTCGTCGGAATCTA 724
|||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 656 CATTGGCTTCAAAAGGATGGACAATTTACAAAACGAAAGAGAATCCGACGCCGGAATCTA 715
Query 725 CTAGCAACGGAGGGAGCTCAGTGTATCTGTTTAGGAAAGTGTATACGGGTCGGATCATGG 784
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 CTACCAACGGAGTGAGCTCAGTGTATCTGTTTAGGAAAGTGTATACTGGTCGGATCATGA 775
Query 785 CCCGAGAAGGAAACGGGTCGTGTAGAGTAAGAGAGCTGAGACTTCCTCAATTGGATTTTA 844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 776 CCCGAGAAGGAAACGGGTCGTGTAGAGTAAGAGAGCTGAGACTTCCTCAATTGGATTTCA 835
Query 845 GGAACGCACCTCTACGGATTTTGCAATATTTGATGTTGATGACTGACGATATCTTCTTCC 904
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 836 GGAACGCACCTCTACGGATTCTGCAATATTTGATGTTGATGACTGACGATATATTTTTCC 895
Query 905 TTGCGTAA 912
||||||||
Sbjct 896 TTGCGTAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5