BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940372
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem... 1498 0.0
AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC doma... 87.9 1e-16
> AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr5:2858849-2860262
REVERSE LENGTH=1234
Length=1234
Score = 1498 bits (811), Expect = 0.0
Identities = 865/892 (97%), Gaps = 0/892 (0%)
Strand=Plus/Plus
Query 1 CAACAGAGAAGAAGAAGAGAATGAAGGCGGAGCTTAATTTACCGGCTGGGTTCCGATTCC 60
||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 99 CAACAGACAAGAAGAAGAGAATGAAGTCGGAGCTAAATTTACCAGCTGGGTTCCGATTCC 158
Query 61 ATCCAACGGACGAGGAGCTTGTGAAATTCTACTTGTGCCGGAAATGTGCATCGGAGCAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 159 ATCCAACGGACGAGGAGCTTGTGAAATTCTACTTGTGCCGGAAATGTGCTTCCGAGCAGA 218
Query 121 TCTCGGCTCCGGTTATCGCCGAGATTGATCTGTACAAGTTCAATCCTTGGGAGCTTCCAG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 219 TCTCGGCTCCGGTTATCGCCGAGATTGATCTCTACAAGTTCAATCCTTGGGAGCTTCCAG 278
Query 181 ACATGTCTCTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCTAGAGATCGGAAATACC 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AGATGTCTCTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCTAGAGATCGGAAATACC 338
Query 241 CTAACGGTTCGCGTCCAAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGGAGCAG 300
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CAAACGGTTCGCGTCCTAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGGAGCAG 398
Query 301 ATAAACCTATTGGTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCTG 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 399 ATAAACCGATTGGTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCAG 458
Query 361 GGAAAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTCGCTAATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GGAAAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTCGCTAATG 518
Query 421 TTGATAGATCAGCGTCTGTTAACAAAAAGAACAACCTACGACTTGATGATTGGGTTTTAT 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTGATAGATCAGCTTCTGTTAACAAAAAGAACAACCTACGACTTGATGATTGGGTTTTAT 578
Query 481 GTCGAATATACAACAAGAAAGGAACCATGGAGAAGTATTTCCCCGCGGATGAGAAACCGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 579 GTCGAATATACAACAAGAAAGGAACCATGGAGAAGTATTTCCCCGCGGATGAGAAGCCGA 638
Query 541 GGACGACGACAATGGCTGAACAGTCATCATCGCCTTTTGATACATCGGACTCGACTTACC 600
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 639 GGACCACGACAATGGCTGAACAGTCATCATCACCTTTTGATACATCAGACTCGACTTACC 698
Query 601 CGACATTGCAAGAGGATGATTCGAGTAGCTCAGGTGGTCACGGTCACGTGGTGTCACCGG 660
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 699 CGACATTGCAAGAGGATGATTCCAGCAGCTCAGGTGGTCACGGTCACGTGGTGTCACCGG 758
Query 661 ATGTTTTGGAGGTTCAGAGCGAGCCTAAATGGGGAGAACTTGAGGATGCTTTGGAAGCTT 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 759 ATGTTTTGGAGGTTCAGAGCGAGCCTAAATGGGGAGAGCTTGAGGATGCTTTGGAAGCTT 818
Query 721 TTGATACTTCCATGTTTGGTGGTTCCATGGAGTTGTTACAGCCTGAGGCTTTTGTCCCTC 780
|||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 819 TTGATACTTCAATGTTTGGTAGTTCCATGGAGTTGTTGCAGCCTGACGCTTTTGTCCCTC 878
Query 781 AGTTCTTGTATCAGTCGGATTATTTCACTTCCTTCCAGGATCCGCCGGAGCAGAAACCAT 840
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 879 AGTTCTTGTATCAGTCTGATTATTTCACTTCCTTCCAGGATCCGCCTGAGCAGAAACCAT 938
Query 841 TCTTGAATTGGAGTTTTGCTCCACAGGGGTAAAAACGGAAGAGACTAAAAAA 892
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 939 TCTTGAATTGGAGTTTTGCTCCACAGGGGTAAAAACGGAAGAGACCAAAAAA 990
> AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC domain
containing protein 3 | chr3:5234617-5236088 FORWARD LENGTH=1274
Length=1274
Score = 87.9 bits (47), Expect = 1e-16
Identities = 172/230 (75%), Gaps = 17/230 (7%)
Strand=Plus/Plus
Query 194 CGGAGAGAAAGAGTGGTACTTCTTCTCA--CCTAGAGATCGGAAATACCCTAACGGTTCG 251
||| || ||||| ||||| || || ||| || || ||| |||| || || ||||| ||
Sbjct 309 CGGTGAAAAAGAATGGTA-TT-TTTTCAGCCCGAGGGATAGGAAGTATCCAAACGGGTCA 366
Query 252 CGTCCAAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGG-AGCAGATAAACCTAT 310
| || || |||| || || | |||||||||||||| ||||| | | |||||| |||
Sbjct 367 AGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCGGTA-CGGATAAAGTTAT 425
Query 311 -T-G--GTA---AACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCTGGGA 363
| | | | || ||||| ||| |||||||||||||| | || || ||| ||| |
Sbjct 426 CTCGACGGAGGGAA--GAAGA-GTT-GGTATCAAGAAAGCTTTGGTGTTTTACATTGGAA 481
Query 364 AAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTC 413
||||||||||||| | || ||||||||||| ||||||||||| ||||||
Sbjct 482 AAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTC 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5