BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940375

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08030.1 | Symbols:  | PLC-like phosphodiesterases superfami...   220    5e-57


> AT5G08030.1 | Symbols:  | PLC-like phosphodiesterases superfamily 
protein | chr5:2575033-2576783 REVERSE LENGTH=1251
Length=1251

 Score =  220 bits (119),  Expect = 5e-57
 Identities = 145/158 (92%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  29   AGACATACGCGGAGATTACATCAGACGCATATTTAGATTACATTAAACTATATGTACCTG  88
            |||| ||||| ||||| ||||||||||||||||| ||||||||||||| |||||||  ||
Sbjct  795  AGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATTG  854

Query  89   AGATTGGTCAATGGAAAGACACAATTGTTCCTGTGAACAATAACTGTCTCATGACACCAA  148
             |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  855  GGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCAA  914

Query  149  CAGTTTTTGTTGCAAGAGCACATTCGCGTAATCTTCAG  186
            ||| ||| ||||| ||||||||||||||||||||||||
Sbjct  915  CAGATTTAGTTGCGAGAGCACATTCGCGTAATCTTCAG  952



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5