BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940380
Length=257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09225.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 355 1e-97
> AT5G09225.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:2869362-2871190
REVERSE LENGTH=552
Length=552
Score = 355 bits (192), Expect = 1e-97
Identities = 237/257 (92%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 1 GATTCTTGAGTTGGAATTAAGATGCCTCACAGAACAAGGCCATTGAAGGGACTCTTGCTT 60
||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 131 GATTCTTGACTTGGAACAAATATGCCTCACAGAACAAGGCCGTTGAAGGGACTCTTGCTT 190
Query 61 TTCACTGGAATAAACTTTGTGTTGGTGCAGACCATTACTCCTGTCTATGACTTTGTCTGC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 191 TTCACTGGAATAAACTTTGTGTTGGTGCAGACCATTACTCCAGTCTATGACTTTGTCTGC 250
Query 121 TTCTTGCCTTACTGGGAGAGAAGGAGAGAGCGAATCCGGCAGGAGCGTGAAGCGGTGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 251 TTCTTGCCTTACTGGGAGAGAAGGAGAGAGCGAATCCGGCAGGAGCGTGAAGCCGCAGCT 310
Query 181 GCATCCTTACACAGCACAAACTCAACACAGAAAGCTACTCAAGCATCTGTTGGATGATGA 240
||||||||| | | | ||| | | || | ||||||||||||||||||||||||||||||
Sbjct 311 GCATCCTTA-A-A-CTCAA-C--A-CA-A-AAAGCTACTCAAGCATCTGTTGGATGATGA 361
Query 241 ACTCTCCTCTACATCTT 257
||||| |||||||||||
Sbjct 362 ACTCTTCTCTACATCTT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11712385517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5