BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940383

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional reg...   100    6e-21


> AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional regulator 
| chr5:2875232-2876575 REVERSE LENGTH=618
Length=618

 Score =  100 bits (54),  Expect = 6e-21
 Identities = 73/81 (90%), Gaps = 5/81 (6%)
 Strand=Plus/Minus

Query  220  AAATAAAAGAGCAA-C----CATTCTTAATACCAACCAAAGCTTGTCTGAACCAAAAGTG  274
            |||||||||||||| |     |||||||||||||||||||||||||||||||||||||||
Sbjct  618  AAATAAAAGAGCAATCATTATATTCTTAATACCAACCAAAGCTTGTCTGAACCAAAAGTG  559

Query  275  AAAGGTTCGATACACCAACTA  295
            |||| ||| ||||||||||||
Sbjct  558  AAAGATTCCATACACCAACTA  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5