BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940390

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09310.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Gamma-sec...   719    0.0  


> AT5G09310.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Gamma-secretase 
aspartyl protease complex, presenilin enhancer-2 subunit 
(InterPro:IPR019379); Has 168 Blast hits to 168 proteins 
in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi 
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: 
NCBI BLink). | chr5:2887192-2888538 REVERSE LENGTH=689
Length=689

 Score =  719 bits (389),  Expect = 0.0
 Identities = 449/478 (94%), Gaps = 3/478 (1%)
 Strand=Plus/Plus

Query  6    TAGTGGCTGAGC-AAAATGGAGGCTTCACGGAGCGACGATCCCAATCTGAACCCTATACG  64
            |||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct  22   TAGTGGCTGAGCAAAAATGGAGGCTACACGGAGCGACGACCCCAGTCTGAACCCTATACG  81

Query  65   CAATCGGAATCCGAATCC-AACTCCGGCTCCGAACCCATTGTCGACGATCATCTCTTCAG  123
            |||||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||||
Sbjct  82   CAATCGGAATCCGAATCCGAA-TCCGAATCCAAACCCATTGTCGACGATCATCTCTTCAG  140

Query  124  CGCAGGTTTGGCCAACCATCGACGGTCCGTTGGGGTTAACGGAGGAAGCATCGGTGGACT  183
            | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  141  CTCAGGTTTGGCCAACCATTGACGGTCCGTTGGGGTTAACGGAGGAAGCATCGGTGGATT  200

Query  184  ACGCTCGTCGATTCTACAAGTTCGGTTTCGCTCTCTTGCCTTGGCTTTGGTTTGTCAATT  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  ACGCTCGTCGATTCTACAAGTTCGGTTTCGCTCTCTTGCCTTGGCTTTGGTTTGTCAATT  260

Query  244  GCTTCTACTTCTGGCCTGTTCTTCGTCACGCTCGTGCTTTCCCTCAAATCCGCAATTATG  303
            ||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct  261  GCTTCTATTTCTGGCCTGTTCTCCGTCACTCTCGGGCTTTCCCTCAAATCCGCAATTATG  320

Query  304  TTGTCCGGTCAGCAATTGGCTTCAGTGTCTTTACTGCTCTTCTTTCTGCGTGGGCATTGA  363
            |||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct  321  TTGTCCGGTCAGCAATTGGCTTTAGTGTCTTTACAGCTCTTCTCTCCGCGTGGGCATTGA  380

Query  364  CATTCTCGATAGGAGGAGAACAACTTTTTGGCCCTGTTTATGATAAGCTGGTTATGTACA  423
            | ||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||
Sbjct  381  CGTTCTCGATAGGAGGAGAACAACTGTTCGGCCCTCTTTACGATAAGCTGGTTATGTACA  440

Query  424  ACGTTGCTGATCGTCTCGGCTTGTCTGGCTTGGCTTAGCCCCCACAGCCTTGTCTCTC  481
            | |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct  441  ATGTTGCTGATCGTCTCGGCTTGTCTGGTTTGGCTTAGCTCCCACCGCCTTGTCTCTC  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5