BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940407
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09463.1 | Symbols: CPuORF41 | conserved peptide upstream op... 351 1e-96
AT5G09462.1 | Symbols: CPuORF42 | conserved peptide upstream op... 351 1e-96
AT5G09461.1 | Symbols: CPuORF43 | conserved peptide upstream op... 351 1e-96
AT5G09460.1 | Symbols: | sequence-specific DNA binding transcr... 351 1e-96
> AT5G09463.1 | Symbols: CPuORF41 | conserved peptide upstream
open reading frame 41 | chr5:2943738-2946839 REVERSE LENGTH=2546
Length=2546
Score = 351 bits (190), Expect = 1e-96
Identities = 202/207 (98%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 4 AGAGTTTGGAAAAG---TTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGTTTGGAAAAGTTATTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 559
Query 61 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTCAGAGTTATTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 560 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGC 619
Query 121 TTGCTTTCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGCTTCCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 679
Query 181 GACGTAGTTGGTTTGTGAGCTTGTGTT 207
|||||||||||||||||||||||||||
Sbjct 680 GACGTAGTTGGTTTGTGAGCTTGTGTT 706
> AT5G09462.1 | Symbols: CPuORF42 | conserved peptide upstream
open reading frame 42 | chr5:2943738-2946839 REVERSE LENGTH=2546
Length=2546
Score = 351 bits (190), Expect = 1e-96
Identities = 202/207 (98%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 4 AGAGTTTGGAAAAG---TTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGTTTGGAAAAGTTATTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 559
Query 61 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTCAGAGTTATTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 560 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGC 619
Query 121 TTGCTTTCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGCTTCCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 679
Query 181 GACGTAGTTGGTTTGTGAGCTTGTGTT 207
|||||||||||||||||||||||||||
Sbjct 680 GACGTAGTTGGTTTGTGAGCTTGTGTT 706
> AT5G09461.1 | Symbols: CPuORF43 | conserved peptide upstream
open reading frame 43 | chr5:2943738-2946839 REVERSE LENGTH=2546
Length=2546
Score = 351 bits (190), Expect = 1e-96
Identities = 202/207 (98%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 4 AGAGTTTGGAAAAG---TTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGTTTGGAAAAGTTATTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 559
Query 61 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTCAGAGTTATTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 560 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGC 619
Query 121 TTGCTTTCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGCTTCCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 679
Query 181 GACGTAGTTGGTTTGTGAGCTTGTGTT 207
|||||||||||||||||||||||||||
Sbjct 680 GACGTAGTTGGTTTGTGAGCTTGTGTT 706
> AT5G09460.1 | Symbols: | sequence-specific DNA binding transcription
factors;transcription regulators | chr5:2943738-2946839
REVERSE LENGTH=2546
Length=2546
Score = 351 bits (190), Expect = 1e-96
Identities = 202/207 (98%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 4 AGAGTTTGGAAAAG---TTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGTTTGGAAAAGTTATTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 559
Query 61 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTCAGAGTTATTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 560 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGC 619
Query 121 TTGCTTTCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGCTTCCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 679
Query 181 GACGTAGTTGGTTTGTGAGCTTGTGTT 207
|||||||||||||||||||||||||||
Sbjct 680 GACGTAGTTGGTTTGTGAGCTTGTGTT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9255448584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5