BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940413
Length=578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein ... 939 0.0
AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15 ... 582 1e-165
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 556 6e-158
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 516 1e-145
> AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2955113-2956673 REVERSE LENGTH=1163
Length=1163
Score = 939 bits (508), Expect = 0.0
Identities = 555/578 (96%), Gaps = 1/578 (0%)
Strand=Plus/Plus
Query 1 ATTTGGAAAACGTAAGCAGACCACAGATTTAGGGTTTATCCACCTTATCCTTCGCCGAGA 60
|||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 54 ATTTGGAAAACGCAAGC-TACCACAGATTTAGAGTTTATCCACCTTATCTTTCGCCGAGA 112
Query 61 TCCAACAATGGCTGATGTCGAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAAAAGAGAAC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 113 TCCAACAATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAGAAGAGAAC 172
Query 121 GTTCAAGAAATTCGCCTTCAGAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACTGA 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 173 GTTCAAGAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGA 232
Query 181 TGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAG 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 233 TGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAG 292
Query 241 AAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGA 352
Query 301 GAAGCCAGAACCAGTGAGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGG 360
||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 353 GAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGG 412
Query 361 AAGCATCATCGGTGTGTACAATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGAT 420
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 413 AAGCATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGAT 472
Query 421 GATTGGACATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCC 480
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 473 GATTGGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCC 532
Query 481 TGGTGTTGGTGCTACTCACTCCTCCAGGTTCATCCCTCTCAAGTGAAGACCTTACAGAGT 540
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 533 TGGCGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGAAGACCATACAGAGT 592
Query 541 CTGTGTTGTGCTCTTGTTTTCTTAGCTCTCATTATGCA 578
|||||||||||||||||||| |||| ||||||||||||
Sbjct 593 CTGTGTTGTGCTCTTGTTTTGTTAGATCTCATTATGCA 630
> AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15
| chr1:1141604-1143053 REVERSE LENGTH=800
Length=800
Score = 582 bits (315), Expect = 1e-165
Identities = 431/487 (89%), Gaps = 7/487 (1%)
Strand=Plus/Plus
Query 45 TTATCC-TTCGCCGAGATCCAA-CAATGGCTGATGTCGAACCAGAGGTTGCAGCAGCAGG 102
|||||| || || ||||||||| | ||||| ||||| |||||||||||||| || || ||
Sbjct 70 TTATCCTTTTGCTGAGATCCAATC-ATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGG 128
Query 103 AGTTCCAAAAAAGAGAACGTTCAAGAAATTCGCCTTCAGAGGAGTCGATCTCGATGCTCT 162
|||||| || ||||| ||||| ||||| || ||||||| |||||| ||||||||||||||
Sbjct 129 AGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCT 188
Query 163 TCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGTAGAAGGTT 222
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 189 TCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTT 248
Query 223 CTCTAGAGGATTGACGAGAAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAG 282
||||||||| ||||| || ||||| |||||| |||||||||| || | || ||||||||
Sbjct 249 CTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAG 308
Query 283 AGAGGCACCAGCT-GGTGAGAAGCCAGAACCAGTGAGAACCCACCTAAGGAACATGGTCA 341
||||||||| | |||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 309 GGAGGCACCA-CAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCA 367
Query 342 TTGTGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAATGGAAAGACTTTCAACCAAG 401
| || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 368 TCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGG 427
Query 402 TTGAGATCAAGCCTGAGATGATTGGACATTACCTTGCTGAATTCTCTATCTCGTACAAGC 461
||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||
Sbjct 428 TTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGC 487
Query 462 CAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACTCACTCCTCCAGGTTCAT-CCCTCTC 520
| || ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||| ||
Sbjct 488 CGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCC-CTT 546
Query 521 AAGTGAA 527
|||||||
Sbjct 547 AAGTGAA 553
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 556 bits (301), Expect = 6e-158
Identities = 401/449 (89%), Gaps = 8/449 (2%)
Strand=Plus/Plus
Query 83 CCAGAGGTTGCAGCAGCAGGAGTTC-CAAAAAAGAGAACGTTCAAGAAA-TTCGCCTTCA 140
||||||||||| || || ||| || |||||||||||||||||| ||| || ||||||
Sbjct 78 CCAGAGGTTGCTGCGGCTGGA-ATCGTAAAAAAGAGAACGTTCAA-AAAGTTTTCCTTCA 135
Query 141 GAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCT 200
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 136 GAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTTCC 195
Query 201 CTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTGATTA 260
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 196 CTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCA 255
Query 261 AGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGTGAGAA 320
||||||| || || ||||||| || ||||||||||| |||||||||| | |||||||||
Sbjct 256 AGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAGAA 315
Query 321 CCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCATCATCGGTGTGTACA 380
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 316 CCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 375
Query 381 ATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CT 439
||||||||||||| ||||| || |||||||| || |||||||||||||||||| ||| ||
Sbjct 376 ATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTAC-TTGGCT 434
Query 440 GAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACTCAC 499
|| || || ||||| || ||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 435 GAGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTAC-CAA 493
Query 500 T-CCTCCAGGTTCATCCCTCTCAAGTGAA 527
| ||||||| || ||||||||||||||||
Sbjct 494 TTCCTCCAGATTTATCCCTCTCAAGTGAA 522
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 516 bits (279), Expect = 1e-145
Identities = 397/453 (88%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 80 GAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAAAAGAGAACGTTCAAGAAA-TTCGCCTT 138
||||||||||||| || || ||| || ||||||||||| ||||| ||| || | ||
Sbjct 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAA-AAAGTTTTCTTT 62
Query 139 CAGAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACT-GATGATCTTGTCAAGC-TC 196
||||||||||||||||||||| |||||||||||||| | | || ||||||||||| | |
Sbjct 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCA-TCGAAGATCTTGTCAAACAT- 120
Query 197 TTCTCTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTG 256
||| |||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
Query 257 ATTAAGAAACTCCGCAAGGCGAAAA-GAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGT 315
||||||||| | ||||| ||||||| | ||||||||||||||||||||||||| | ||||
Sbjct 181 ATTAAGAAATTGCGCAAAGCGAAAATG-GAGGCACCAGCTGGTGAGAAGCCAGCATCAGT 239
Query 316 GAGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCATCATCGGTGT 375
|||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299
Query 376 GTACAATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGACATTACCT 435
|||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
Sbjct 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTAC-T 358
Query 436 TG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTA 494
|| |||| ||||| ||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 359 TGGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTA 418
Query 495 CTCACT-CCTCCAGGTTCATCCCTCTCAAGTGA 526
| || | |||||||||| |||||||||||||||
Sbjct 419 C-CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27779483291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5