BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940419

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09570.1 | Symbols:  | Cox19-like CHCH family protein | chr5...   436    6e-122


> AT5G09570.1 | Symbols:  | Cox19-like CHCH family protein | chr5:2970669-2972181 
FORWARD LENGTH=695
Length=695

 Score =  436 bits (236),  Expect = 6e-122
 Identities = 323/362 (89%), Gaps = 17/362 (5%)
 Strand=Plus/Plus

Query  50   CGTGCTCCTCCTCCAGCAACAGCTCAGCCTAGTGGCGGTGG-TATCT-TTA-GAAATATT  106
            ||||||||||||||||||||||||||||||||| ||||||| | | | ||| | ||||||
Sbjct  152  CGTGCTCCTCCTCCAGCAACAGCTCAGCCTAGTAGCGGTGGTTCTTTCTTAGGCAATATT  211

Query  107  CG-G--TCCATAGTTGATGGTTTTGCTTTTAGTGCTGGAAATGCAGTTT-CACACAGGGT  162
             | |  ||||||  ||| ||| | ||||   || |||||| |||| |||  |||||||||
Sbjct  212  GGTGCATCCATAACTGAAGGTCTGGCTTGGGGTACTGGAACTGCA-TTTGGACACAGGGT  270

Query  163  TGTGGATTCTGTGATGGGTCCACGAACCTTTAAGCACGAAACCGTTGTTTCTCAGGCTGA  222
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct  271  TGTGGATTCTGTGATGGGTCCACGAACCTTTAAGCACGAAACCGTTGTTTCTCAGG-T--  327

Query  223  CCCTGCTTCCCCTGTTGCAACTAGCATGAGTGCTTGTGACATTCACTCCAAGGCTTTCCA  282
               | |  |  ||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  328  ---T-C--CATCTGCTGCAAATACCATGACTGCTTGTGACATTCACTCCAAGGCTTTCCA  381

Query  283  AGATTGCGTCAACCATTTTGGAAGCGACATCAGTAAGTGCCAGTTCTACATGGACATGCT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  382  AGATTGCGTCAACCATTTTGGAAGCGACATCAGTAAGTGCCAGTTCTACATGGACATGCT  441

Query  343  GAGTGAATGCAAGAAGAATTCTGGTTCCGTGGTGGCTGCTTAATCAACTAGTCGAGATGT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  GAGTGAATGCAAGAAGAATTCTGGTTCCGTGGTGGCTGCTTAATCAACTAGTCGAGATGT  501

Query  403  CT  404
            ||
Sbjct  502  CT  503


 Score = 75.0 bits (40),  Expect = 5e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  2   CTTCAACATCTGAAATTCAAAATGCCTCGAGGTAGCTCCGGAG  44
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  44  CTTCAACATCTGAAATTCAAAATGCCTCGAGGAAGCTCCGGAG  86



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5