BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940424
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09610.1 | Symbols: APUM21, PUM21 | pumilio 21 | chr5:298115... 708 0.0
> AT5G09610.1 | Symbols: APUM21, PUM21 | pumilio 21 | chr5:2981156-2982709
FORWARD LENGTH=1554
Length=1554
Score = 708 bits (383), Expect = 0.0
Identities = 456/492 (93%), Gaps = 2/492 (0%)
Strand=Plus/Plus
Query 681 CAGAGGCAAATACAGAGACCTAATCTTCGAGTGCGTCGCCAAGAACGCCGAATGGTTAGC 740
|||||||| |||||||||||||||||| ||||||||||| || ||||| || |||||| |
Sbjct 1062 CAGAGGCATATACAGAGACCTAATCTTTGAGTGCGTCGCAAACAACGCAGATTGGTTATC 1121
Query 741 TTTTGACCCCTACGGAACACACGTTGTACAGAACTTTCTGACACTTCAGAACCCCGTTGC 800
|||||||||||| |||||||||||||| |||||| |||||| ||||||||| || |||||
Sbjct 1122 TTTTGACCCCTATGGAACACACGTTGTGCAGAACATTCTGATACTTCAGAATCCGGTTGC 1181
Query 801 AACAACCGCAATCGCCGAGAGACTTCGTGGAAATTTCTTCAGTTTAGCGATGGAGAGACA 860
||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1182 AACAACCGCAATCGCTGAGAGACTTCGTGGAAGTTTCTTCAGGTTAGCGATGGAGAGACA 1241
Query 861 AGGAAGCTATGTGGTGGAGAAGTGTTTGAAATCGGATTTTGCTAGAGGGAAAGTGTTGGA 920
||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1242 AGGAAGCTATGTGGTGGAGAAGTGTTTAAAATCGGATTTTGCGAGAGACCAAGTGTTGGA 1301
Query 921 GGAGTTTAGAGGAAATGATAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 980
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GGAGTTTAGAGGGAATGCCAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 1361
Query 981 TGTGGTACAATGTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCAATGTTGAGAGA 1040
||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1362 TGTGGTACAGTCTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCACTGTTGAGAGA 1421
Query 1041 GTTTGTGGAGAAGCTAAGGCCTCACTTCTGG-AGGATGGAGATTGGGCATGGGAGGAACA 1099
||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 1422 GTTTGTGGAGAAGCTAAGGCCTCACTT-TGGGAAGATGGAGATTGGGCGTGGGAGGAACA 1480
Query 1100 CACTGAGACTAATTCAAGAAGAAATTGTGGGTTGGATTAATCAGTTACCAGATAAATCTG 1159
||||| || | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1481 CACTGCGAGTGATTCAAGAAGAAATTGTTGGTTGGATTAATCAGTTACCAGATAAATCTG 1540
Query 1160 GATATATGAACT 1171
||||| ||||||
Sbjct 1541 GATATGTGAACT 1552
Score = 699 bits (378), Expect = 0.0
Identities = 509/571 (89%), Gaps = 14/571 (2%)
Strand=Plus/Plus
Query 123 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTAGTCATATCTCCACCGCTAGCTT 182
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 450 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTGGTCATATCTCCGCCGCTAGCTT 509
Query 183 CAACGCTCATCCGGCTTGGA-T--GAC-CCAAT--CTCAACCTGGTGCTTCTTCCTCCAG 236
|||||||| ||| | || | | | | | | | ||||| | || ||||||||||||
Sbjct 510 CAACGCTCCTCC-G-TT-CACTCCGTCGTCGTTGACCCAACCAGATGATTCTTCCTCCAG 566
Query 237 ATACTCCGGCCAACCCTTCCCTCCTCCT-C-C-AAGTTTTGTGAGCCCCGGCGTCGAAAA 293
||| |||||| ||||||||||||||||| | | ||||| |||||||| |||||||| ||
Sbjct 567 ATATTCCGGCAAACCCTTCCCTCCTCCTCCTCTGAGTTTCGTGAGCCCTGGCGTCGACAA 626
Query 294 GGATCATAACTTGCTATCAAGACTGTTGGACATGATGACTTGTGCAGGACGTTTCGCTGA 353
||||| ||||| ||||||||| ||||||||||||||||| |||||| ||||||| ||||
Sbjct 627 GGATCGTAACTGGCTATCAAGTCTGTTGGACATGATGACGTGTGCACAACGTTTCACTGA 686
Query 354 GTTCCAAAAGTTCCTCCAAGATCTCGATACCAATCCAACGGCTGAGAGGGAGAGCCATCT 413
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 GTTCCAAAAGTACCTCCAAGATCTCGATACCTATCCAACGGCTGAGAGGGAGAGCCATCT 746
Query 414 GTTCAAGATCGGATCATTGTTAACCACAAACAAGCGCACTTTCCTCCACTTGGCTACGAA 473
|||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 747 GTTCAAGATCGGATCAGCGTTAACCACAACCAAACGCATTTTCCTCCACTTGGCTACGAA 806
Query 474 CCAATACGGCTCACAATCTTTACATATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 533
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 807 CCAATACGGCTCACAAGCTTTACGTATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 866
Query 534 CTTATTCCACGCTGTTGGCATAAACTTCTTCTTGCTCATGACCGATAAGTACGCTCGAGG 593
||||||| ||| || | || |||||||||||||||||||| ||||||||| | ||| ||
Sbjct 867 CTTATTCTGCGCCGTCGACACAAACTTCTTCTTGCTCATGAGCGATAAGTATGGTCGTGG 926
Query 594 CTTGATCATATCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAGGT-TCTCTACAAGC 652
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 927 CTTGATCATCCCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAG-TCTCTCTACAAGC 985
Query 653 TCACGTACGAATACACTCTGCAACTTGCCAG 683
|||| ||||||||||||||||| ||||||||
Sbjct 986 TCACTTACGAATACACTCTGCACCTTGCCAG 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5