BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940425

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:2081404...   209    1e-53
  AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:1...   172    1e-42
  AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:1683129...   110    1e-23


> AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:20814047-20816035 
REVERSE LENGTH=1134
Length=1134

 Score =  209 bits (113),  Expect = 1e-53
 Identities = 128/135 (95%), Gaps = 2/135 (1%)
 Strand=Plus/Plus

Query  74   GAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG  133
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  462  GAGTGTGGAAGAACGAGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG  521

Query  134  GAGAGTCAAGTTACAGCCCATGGTGCTGCCACAGTCTGAGTTTGATCATCCTGAGAAAGG  193
            ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct  522  GAGGGTCAAGTTACAGCCCATGGTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGG  581

Query  194  TA-ATGATCTCTATG  207
             | ||| ||||||||
Sbjct  582  -AGATGCTCTCTATG  595


> AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15496537-15500847 
FORWARD LENGTH=2070
Length=2070

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 104/109 (95%), Gaps = 2/109 (2%)
 Strand=Plus/Plus

Query  205  ATGGTTCACATGCCATGGAGGTTGCTATAAAGATTCTGCAGTTATTGGTTAGTAAGCTTG  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  565  ATGGTTCACATGCCATGGAGGTTGCTATAAAGATTCTGCAGTTATTGGTTAGTAAGCTTG  624

Query  265  ATGGTGAGAGCATGAATATTGAACGCTTCTTAGAACTGTCCTTTTGGTG  313
            || ||| |||||||| |||||||||||||||||||||||| ||| ||||
Sbjct  625  ATTGTGGGAGCATGACTATTGAACGCTTCTTAGAACTGTC-TTT-GGTG  671


> AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831293-16833280 
REVERSE LENGTH=1054
Length=1054

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 115/142 (81%), Gaps = 3/142 (2%)
 Strand=Plus/Plus

Query  68   GAAGCAGAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACG  127
            ||| || ||| |||||||| | ||||| ||||||  ||| ||||||||||||||||||||
Sbjct  478  GAATCA-AGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATCAGAACAAACG  536

Query  128  TGGTGGGAGAGTCAAGTTACAGCCCATGGTGCTGCCACAGTCTGAGTTTGATCATCCTGA  187
            ||||||||| || ||||||||| |||| ||  |||| |  || |||||||| |||  |||
Sbjct  537  TGGTGGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGA  596

Query  188  GAAAGGTA-ATGATCTCTATGG  208
             ||||| | ||| ||| |||||
Sbjct  597  CAAAGG-AGATGCTCTTTATGG  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5