BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940427
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09630.1 | Symbols: | LisH/CRA/RING-U-box domains-containin... 1764 0.0
> AT5G09630.1 | Symbols: | LisH/CRA/RING-U-box domains-containing
protein | chr5:2985856-2987652 REVERSE LENGTH=1530
Length=1530
Score = 1764 bits (955), Expect = 0.0
Identities = 1123/1204 (93%), Gaps = 12/1204 (1%)
Strand=Plus/Plus
Query 10 ATTAATCAGAAGAAAAATGGATATGACT-G----GT-ACTGTGAGAGATGCATTTGATCG 63
|||| |||||| ||| |||||| ||||| | || |||||||||||||||||||||||
Sbjct 194 ATTAGTCAGAACAAATATGGATGTGACTGGCACTGTGACTGTGAGAGATGCATTTGATCG 253
Query 64 AGTTTCTAAGAAACAGAAGCTGTATCACTCAGTTACTCAAGATGTTATCGATCTTGTTTG 123
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 254 AGTTTCTAAAAAACAGAAGCTGTATCACTCAGTTACTCAAGATGTCATTGATCTAGTTTG 313
Query 124 TGATGGAATCCAAGATACATTGACTCAAATCCAAACAGATAATAACGATGGAGTAGAACC 183
|||||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||
Sbjct 314 TGATGGAATCCAAGATACATTGACTCGAATCCAATTAGGTAACGACGATGGAGTAGAACC 373
Query 184 CGAATCAGTTCTAACCGAGTTGAGGCGCAAGCTTGATGCTCTTTTACCGATTATCCAGCT 243
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 374 GGAATCGGTTCTTACCGAGTTGAGACGCAAGCTTGATGCTCTTTTACCGATTATCCAGCT 433
Query 244 TCAGAAATCACAGAAGGAAACTAAATGGAGTCTTAGCAAGTTGGTGAAATTGTTTGAGGT 303
|||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 434 TCAGAAATCACATAAGGAAACTAAATGGAGTCTTAGTAAGTTGGTGAAATTGCTTGAGGT 493
Query 304 TTCTTACCATCCTGATATATCTCTAGCCTGCTTCAGCGTTGATTTCGATATCAACTTAAT 363
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 494 TTCTTACCATCCTGATATATCTCTAGCCTGCTTTAGCGTTGATTTCGATATCAACTTAGT 553
Query 364 GAATAAGATACTTATCCACCATTGTTACCGAGAAGGGTTGTTCGACGTTGGTGATTGTCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAATAAGATACTTATCCACCATTGTTACCGAGAAGGGTTGTTCGACGTTGGTGATTGTCT 613
Query 424 GGTTAAGGAGTCTGGAAGAGAGGAAGAAACCAAGGTTAGATCTCAGTTCTTAGAGTTCCA 483
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 614 GGTTAAGGAGGCTGGAAGAGAGGAAGAAACTGAGGTTAGATCTCAGTTCTTAGAGTTCCA 673
Query 484 CCAGATAGTGGACTCATTGAAGCTCAGAAACATCGAGCCTGCTATGAGATGGATCTTTGC 543
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 674 CCAGATAGTGGACTCATTGAAGCTCAGAAACATTGAGCCTGCAATGAGATGGATCTTTGC 733
Query 544 GAACCGCGGAAAGCTGAAGCAAAAGGGTTCGAAGTTGGAGTTTAAACTCATAAGTTTGAA 603
||||||||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||
Sbjct 734 GAACCGCGGAAAGCTGAAGCAAAAGAGTTCAAAGCTGGAGTTTAAGCTCTTAAGTTTGAA 793
Query 604 GTACTGTGATATTTTAAGAGAAGGAAACCGTGTTGATGCTTTGGAGTATGCAAAAACCCA 663
|||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 794 GTACTGTGATATATTAAGAGAAGGAAAGAGTGATGATGCTTTGGAGTATGCAAGAACCCA 853
Query 664 TTTTCAC-CAATATCCACTACACTTTAAAGAGATACAAAAGCTTATCACTTGTCTGCTAT 722
|||| || ||||||||||| || ||||| |||||||||||||||||||||||| | |||
Sbjct 854 TTTT-ACGCAATATCCACTCCATTTTAAGGAGATACAAAAGCTTATCACTTGTTTATTAT 912
Query 723 GGATTGAAAA-TTTAGAGAAAAGTCCTTATGCAGAGATAGTTTCTCCATCATGTTGGGAC 781
|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GGATTGGAAACTTT-GAGAAAAGTCCTTATGCAGAGATAGTTTCTCCATCATGTTGGGAC 971
Query 782 AAGGTAACCAAAGAGGTAATCATGGAATATCACCATCTTCTTGATCAGCCAATTAACTCC 841
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 972 AAGGTAACCAAAGAGCTAATCATGGAATATCACCATCTTCTCGATCAGCCAATTAACTCC 1031
Query 842 CCGTTAAAAGTCGCTTTATCCGCGGGTTATGAGAGCTTACCGTCACTTTTAAAGCTGGTT 901
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1032 CCGTTGAAAGTCGCTTTATCCGCGGGTTATGAGAGCTTACCGTCACTGTTAAAGCTGGTT 1091
Query 902 CATTTAATGGCTTTGACGAAACAAGAATGGCAAGCTATGAAACATCTTCCGGTTCCTCTA 961
||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1092 CATCTAATGGCATTGACGAAACAAGAATGGCAAGCAATGAAACAGCTTCCGGTTCCTCTG 1151
Query 962 GAGTTAGGGAACGAGTTTCAGTTTCACTCGGCTTTTGTGTGTCCTGTGAGTAGAGACCAG 1021
||||||||||| |||| | |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 1152 GAGTTAGGGAATGAGTATAAGTTCCACTCGGCTTTTGTTTGTCCCGTGAGTAGAGATCAA 1211
Query 1022 AGCAGCGAAGAAAACCCGCCAATGCTGTTGTCTTGTGGTCATGTTATTAGCAAGCAGTCA 1081
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 1212 AGCAGCGAAGAAAACCCGCCGATGCAGTTGCCTTGTGGTCATGTTATTAGCAAGCAGTCA 1271
Query 1082 ATGATGAGACTCAGCAAGAACTGCGCTCACCGCATATTCAAATGCCCTTATTGTCCTGCA 1141
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1272 ATGATGAGACTCAGCAAGAACTGCGCTTTCCGCACATTCAAATGCCCTTATTGTCCTGCA 1331
Query 1142 GAGACTTCAGCTTCAGCATGCAGGCAATTATACTTTTGAAAGG-TTTGGTAATTTAGTTA 1200
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1332 GAGACTTTAGCTTCAGCATGCAGGCAATTATACTTTTGAA-GGATTTGGTAATTTAGTTA 1390
Query 1201 ATTT 1204
||||
Sbjct 1391 ATTT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5