BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940438 Length=524 Score E Sequences producing significant alignments: (Bits) Value AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein ... 819 0.0 AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein ... 564 3e-160 > AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein | chr5:3035040-3036561 REVERSE LENGTH=753 Length=753 Score = 819 bits (443), Expect = 0.0 Identities = 496/522 (95%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 1 ATCACTTCTCCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACC 60 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 24 ATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACC 83 Query 61 GTATGTCCATGCTCAGGACAATGGTTTCTCAGTTAGTGAAGCACGAGCGTATTGAGACCA 120 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 84 GTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCA 143 Query 121 CCGTCACTAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAG 180 | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 144 CTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAAG 203 Query 181 A-GGGTACACTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 239 | |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 204 AGGGGT-CACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262 Query 240 CACAAGATTTTCACTGAATTGGCATATAGATACAAAGATAGAGCTGGTGGATACACAAGA 299 |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322 Query 300 CTGCTCCGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 359 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382 Query 360 GACAGAGAGAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTG 419 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442 Query 420 CCGTTGGACCCATGGGAAAGATCTCGGCTCACCAAGCAGTTCGCTCCGCCTAAGGAGGAG 479 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 443 CCATTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGTTCGCTCCGCCTAAGGAGGAG 502 Query 480 AAAAGCTCTGATTCTGAGCTGTAATGTGGCATAATAAATTTC 521 |||| | ||||||||||||||||||||||||||| |||||| Sbjct 503 AAAATCCCTGATTCTGAGCTGTAATGTGGCATAAGCAATTTC 544 > AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein | chr5:25839360-25840809 REVERSE LENGTH=699 Length=699 Score = 564 bits (305), Expect = 3e-160 Identities = 436/499 (87%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 10 CCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACCGTATGTCCA 69 |||||| |||||||||||||||||||||||| ||||| || || |||||||||||||||| Sbjct 24 CCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCAGGTCACCGTATGTCCA 83 Query 70 TGCTCAGGACAATGGTTTCTCAGTTAGTG-AAGCACGAGCGTATTGAGACCACCGTCACT 128 |||||||||| ||||||||||| || ||| || |||||||| ||||||||||| || || Sbjct 84 TGCTCAGGACTATGGTTTCTCAATTGGTGCAA-CACGAGCGAATTGAGACCACTGTTACA 142 Query 129 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAGAGGGTACA 188 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 143 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAGGGTTCA 202 Query 189 CTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTTCACAAGATT 248 || ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct 203 CTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTTCACAAGATT 262 Query 249 TTCACTGAATTGGCAT-ATAGATACAAAGATAGAGCTGGTGGATACACAAGACTGCTCCG 307 || || |||||||| | || |||||||||||||||||||||||||||||||| |||| || Sbjct 263 TTTACAGAATTGGC-TCATCGATACAAAGATAGAGCTGGTGGATACACAAGAATGCTTCG 321 Query 308 TACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATTGACAGAGA 367 ||||||||| || |||||||||||||| || |||||||||||||||||||| || ||||| Sbjct 322 TACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATATCGAGTTTATCGATAGAGA 381 Query 368 GAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTGCCG-TTGG 426 |||||| || |||||||| |||||||| || |||||||| |||| |||||||| ||| Sbjct 382 GAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTCCACCTCGAGTGCCACTTG- 440 Query 427 ACCCATGGGAAAGATCTCGGCTCACCAAGCAGT-TCGCTCCGCCTAAGGAGGAGAAAAGC 485 | ||||||| ||||| || ||||||| ||||| | ||||| || |||||||| |||| | Sbjct 441 ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGGAAAAAA-C 498 Query 486 T-CTGATTCTGAGCTGTAA 503 | |||||||||| || ||| Sbjct 499 TTCTGATTCTGACCTATAA 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25066839353 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5