BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940438
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein ... 819 0.0
AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein ... 564 3e-160
> AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein
| chr5:3035040-3036561 REVERSE LENGTH=753
Length=753
Score = 819 bits (443), Expect = 0.0
Identities = 496/522 (95%), Gaps = 2/522 (0%)
Strand=Plus/Plus
Query 1 ATCACTTCTCCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACC 60
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 24 ATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACC 83
Query 61 GTATGTCCATGCTCAGGACAATGGTTTCTCAGTTAGTGAAGCACGAGCGTATTGAGACCA 120
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 84 GTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCA 143
Query 121 CCGTCACTAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAG 180
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 144 CTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAAG 203
Query 181 A-GGGTACACTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 239
| |||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 204 AGGGGT-CACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262
Query 240 CACAAGATTTTCACTGAATTGGCATATAGATACAAAGATAGAGCTGGTGGATACACAAGA 299
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322
Query 300 CTGCTCCGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382
Query 360 GACAGAGAGAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTG 419
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442
Query 420 CCGTTGGACCCATGGGAAAGATCTCGGCTCACCAAGCAGTTCGCTCCGCCTAAGGAGGAG 479
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 443 CCATTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGTTCGCTCCGCCTAAGGAGGAG 502
Query 480 AAAAGCTCTGATTCTGAGCTGTAATGTGGCATAATAAATTTC 521
|||| | ||||||||||||||||||||||||||| ||||||
Sbjct 503 AAAATCCCTGATTCTGAGCTGTAATGTGGCATAAGCAATTTC 544
> AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein
| chr5:25839360-25840809 REVERSE LENGTH=699
Length=699
Score = 564 bits (305), Expect = 3e-160
Identities = 436/499 (87%), Gaps = 10/499 (2%)
Strand=Plus/Plus
Query 10 CCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACCGTATGTCCA 69
|||||| |||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 24 CCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCAGGTCACCGTATGTCCA 83
Query 70 TGCTCAGGACAATGGTTTCTCAGTTAGTG-AAGCACGAGCGTATTGAGACCACCGTCACT 128
|||||||||| ||||||||||| || ||| || |||||||| ||||||||||| || ||
Sbjct 84 TGCTCAGGACTATGGTTTCTCAATTGGTGCAA-CACGAGCGAATTGAGACCACTGTTACA 142
Query 129 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAGAGGGTACA 188
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 143 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAGGGTTCA 202
Query 189 CTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTTCACAAGATT 248
|| ||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 203 CTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTTCACAAGATT 262
Query 249 TTCACTGAATTGGCAT-ATAGATACAAAGATAGAGCTGGTGGATACACAAGACTGCTCCG 307
|| || |||||||| | || |||||||||||||||||||||||||||||||| |||| ||
Sbjct 263 TTTACAGAATTGGC-TCATCGATACAAAGATAGAGCTGGTGGATACACAAGAATGCTTCG 321
Query 308 TACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATTGACAGAGA 367
||||||||| || |||||||||||||| || |||||||||||||||||||| || |||||
Sbjct 322 TACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATATCGAGTTTATCGATAGAGA 381
Query 368 GAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTGCCG-TTGG 426
|||||| || |||||||| |||||||| || |||||||| |||| |||||||| |||
Sbjct 382 GAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTCCACCTCGAGTGCCACTTG- 440
Query 427 ACCCATGGGAAAGATCTCGGCTCACCAAGCAGT-TCGCTCCGCCTAAGGAGGAGAAAAGC 485
| ||||||| ||||| || ||||||| ||||| | ||||| || |||||||| |||| |
Sbjct 441 ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGGAAAAAA-C 498
Query 486 T-CTGATTCTGAGCTGTAA 503
| |||||||||| || |||
Sbjct 499 TTCTGATTCTGACCTATAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25066839353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5