BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940442

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09805.1 | Symbols: IDL3 | inflorescence deficient in abscis...   455    1e-127


> AT5G09805.1 | Symbols: IDL3 | inflorescence deficient in abscission 
(IDA)-like 3 | chr5:3047218-3047517 FORWARD LENGTH=300
Length=300

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 280/297 (94%), Gaps = 0/297 (0%)
 Strand=Plus/Plus

Query  23   ATGCCTTCTCGAAGCCAAAGATCAAGAACATATCAACTCACGAGAACAATCCCTATACTT  82
            ||| |||||||||||||  ||||||||| ||||||||||||||||||||| ||||| |||
Sbjct  1    ATGTCTTCTCGAAGCCACCGATCAAGAAAATATCAACTCACGAGAACAATTCCTATTCTT  60

Query  83   GTTCTTCTTCTTGTCCTTTTGAGTTGCTGCAATGGAGCAAGAACCACGAACGTCTTCAAC  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTCTTCTTCTTGTCCTTTTGAGTTGCTGCAATGGAGCAAGAACCACGAACGTCTTCAAC  120

Query  143  ACGAGCTTGCCACCCAAACAAAAGGATGTCGTTTCGCCACCTCATGATCATGACCATCGT  202
            || |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct  121  ACAAGCTCGCCACCCAAACAAAAGGACGTCGTTTCGCCACCTCATGATCATGTCCATCAT  180

Query  203  CAAGTACAAGATCACAAGAGTGTACAGTTCTTGGGATCACTTCCACGTCAGTTTCCGGTT  262
            ||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct  181  CAAGTACAAGATCACAAAAGTGTACAGTTCTTGGGGTCCCTGCCACGTCAGTTTCCGGTT  240

Query  263  CCAGCTTCTGGTCCTTCCAGAAAACATAACGAAATCGGTTTAAGTAGTACTAGGACT  319
            ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  241  CCAACTTCTGGTCCTTCCAGAAAACATAACGAAATCGGTTTAAGTAGTACTAAGACT  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5