BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940448
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09860.1 | Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear mat... 3068 0.0
> AT5G09860.1 | Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear matrix
protein-related | chr5:3066632-3070933 FORWARD LENGTH=2183
Length=2183
Score = 3068 bits (1661), Expect = 0.0
Identities = 1774/1827 (97%), Gaps = 14/1827 (1%)
Strand=Plus/Plus
Query 2 GTGGAAGCTGGTACATCT-AG----AATGGATACATTTAGAGATGCTATATTGCAACGAG 56
|||||||||||| ||| | || ||||||| |||||||||||||||||||||| ||||
Sbjct 159 GTGGAAGCTGGTTCAT-TGAGAAATAATGGATGCATTTAGAGATGCTATATTGCAGCGAG 217
Query 57 CTCCTATTGAAAGCTTTGCACTCAAGACTGTTCAACAGTTTATACAACCTCAGAAACAAA 116
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 218 CTCCAATTGAAACCTTTGCACTCAAGACTGTTCAACACTTTATACAACCTCAGAAACAAA 277
Query 117 CAAAGTTGGCCCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGG 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CAAAGTTGGCTCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGG 337
Query 177 ACCTAGTGGCTGCTGCTGCGCAATCAGGAGAGCAAATTATGCAGTATGGTCAGTtgatt- 235
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 338 AGCTAGTGGCTGCTGCTGCGCAATCAGGGGAGCAAATTATGCAGTATGGTCAGTTGATTG 397
Query 236 --gatgatgatgatgat-A--ATATACATGGCCAGATTCCTCATCTTCTAGATGTTGTGC 290
||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 398 ACGATGATGATGATGATGATGATATACATGGACAGATTCCTCATCTTCTAGATGTTGTGC 457
Query 291 TTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATT 517
Query 351 TGACCGAAATGTCTACTATGAAAAATTGTAAAGATGTTTTCGGTTATATTGAAAGCAAAC 410
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 518 TGACCGAAATGTCTACTATGAAAAACTGTAAAGATGTTTTCGGTTATATTGAAAGCAAAC 577
Query 411 AAGATATATTGGGCAAGCAAGAGCTGTTTGCACGCGGAAAACTTGTAATGTTGAGGACTT 470
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 578 AAGATATATTGGGCAAGCAAGAGCTTTTTGCACGCGGAAAACTTGTCATGTTGAGGACTT 637
Query 471 GCAACCAACTTCTCCGGCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTC 530
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GCAACCAACTTCTCCGCCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTC 697
Query 531 TCATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTGAATATAAAAGGCG 590
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 698 TTATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTCAATATAAAAGGTG 757
Query 591 TTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAG 817
Query 651 ATTTCAACTTCTATAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTC 710
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 ATTTCAACTTCTACAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTC 877
Query 711 TTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACA 937
Query 771 CCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGG 997
Query 831 CAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGG 1057
Query 891 ATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTGAGGG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1058 ATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTAAGGG 1117
Query 951 CACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCAT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 CACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCAT 1177
Query 1011 GTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCC 1237
Query 1071 GTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGAT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 GTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGAT 1297
Query 1131 GCCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAAC 1190
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GTCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAAC 1357
Query 1191 GGAGACAAAGATGGAGATTGGGCAATAAAGAACTCTCCCAACTTTGGAGATGGGCTGATC 1250
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1358 GGAGACAAAGATGGAGATTGGGAAATAAAGAACTCTCCCAACTTTGGAGATGGGCAGATC 1417
Query 1251 AAAATCCGAATGCTTTGACTGATTCTCAACGTGTCCGAACCCCTGACATTGCAGACTACT 1310
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1418 AAAATCCGAATGCTTTGACTGATTCTCAACGCGTGCGAACCCCTGATATTGCAGACTACT 1477
Query 1311 GGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTATCATCATA 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1478 GGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTACCATCATA 1537
Query 1371 AAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 AAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAG 1597
Query 1431 GATTTTCTAGGTTTACCGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGC 1490
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 GATTTTCTAGGTTTACTGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGC 1657
Query 1491 CTGAGGTCCGGTCCAAATACCAAGCTAAACCGAACGAAAAAGCCAAACGAGCTAAGAAAG 1550
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1658 CTGAGGTCCGGTCCAAATACCAAGCTAAACCAAACGAAAAAGCCAAACGAGCGAAGAAAG 1717
Query 1551 AAGAAGCCAAAGGTGGATCTCAGGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTG 1610
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1718 AAGAAACCAAAGGTGGATCTCATGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTG 1777
Query 1611 AAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 AAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAG 1837
Query 1671 ACACTCCTACGCCTGAGGAACAACAAAGACTCGGTGTTTCTGACACAGAAAACGGTCAAG 1730
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 1838 ACACTCCTACGCCTGAGGAACAGCAAAGACTCGGTGGTTCTGATACAGAAAACGGTCAAG 1897
Query 1731 AGGCTGGTCAAATCGAAGACGCAGAGACAGAAGAAGCTGGTTTGATGGACACTGATCTTG 1790
|||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1898 AGGCCGGTCAAATCGAAGACGGAGAGACAGAAGAAGCTGGTCTGATGGACACTGATCTTG 1957
Query 1791 ATCACCC-CACTATGCCTGTCTCATGA 1816
|||| || | ||||||| |||||||||
Sbjct 1958 ATCATCCTC-CTATGCCCGTCTCATGA 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5