BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940450

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09876.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   409    1e-113


> AT5G09876.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 5 Blast hits 
to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:3079987-3080435 FORWARD LENGTH=411
Length=411

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 307/346 (89%), Gaps = 15/346 (4%)
 Strand=Plus/Plus

Query  23   ATGGAGAAGATCCAATC-A--AAGAAGGAGACTAATAAACGAAGGAGAAGAGACGAGATG  79
            ||||||||||||||||| |  ||||| |||| ||||||||| |||||| |||| ||||||
Sbjct  1    ATGGAGAAGATCCAATCAACGAAGAACGAGAGTAATAAACGGAGGAGACGAGAAGAGATG  60

Query  80   ATAACGGAGATAGAGATGGAGGCAGCACAACAGTTGATGCAACTAAGCGACGAAGAGAAT  139
            ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| 
Sbjct  61   ATAACGGAGATAGAGATGGAGGCTGCTCAACAGTTGATGCATCTAAGCGATGAAGAGAAA  120

Query  140  AATATCAATATCATCAAGAAGAAGAAGACGATCGAGGAAATATTTGGTAAAGATGATATT  199
            |||||  |||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
Sbjct  121  AATATGGATATCATCAAGAAGAAGAAGACAATCGAAGAAATATTCGGTAAAGATGATAGT  180

Query  200  CATGATCAAGATCATCAATGCACGAAAGAAATGGTGGTGTTGAGAGTAATGTCATC---G  256
            ||||||||||   ||||||||||| ||||||||||| ||||||||||||| |||||   |
Sbjct  181  CATGATCAAG---ATCAATGCACGGAAGAAATGGTGATGTTGAGAGTAATATCATCATTG  237

Query  257  AAG-A--CGAAGAAGAAGAAGTATAGGACGATTGAGAGCATTTACATGGCGACGAGACCT  313
            ||| |   ||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  238  AAGAAGGAGAAGAAGAAGAAGTATAGGACCATTGAGAGCATTTACATGGCAACGAGACCT  297

Query  314  ATCAGGGTCGTGATTAGATGA-TGAAACATT-AACTATCCTTAGGT  357
            ||||||||||||||||||||| | ||||||| |||| || ||||||
Sbjct  298  ATCAGGGTCGTGATTAGATGAAT-AAACATTTAACTCTCTTTAGGT  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5