BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940457
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09940.1 | Symbols: | Protein of unknown function (DUF1635)... 850 0.0
> AT5G09940.1 | Symbols: | Protein of unknown function (DUF1635)
| chr5:3101192-3101833 FORWARD LENGTH=642
Length=642
Score = 850 bits (460), Expect = 0.0
Identities = 587/647 (91%), Gaps = 13/647 (2%)
Strand=Plus/Plus
Query 26 ATGTACCAAGAAACTTATCAGTATTATCATCTATGGAGACTTGCTGTTCAAGAAAGAGAC 85
||||| ||||||||| | || | ||||||| ||||| ||||||||| ||||||||||||
Sbjct 1 ATGTATCAAGAAACTAAGCAATTTTATCATTTATGGCTACTTGCTGTCCAAGAAAGAGAC 60
Query 86 GAAGCAAGAGAACATCTGAAACAATCACTCG-CGGAACTCTCGAGAATACAGGAACACTT 144
||||||||||||||| ||||||||||||||| | ||||| || ||| |||||||| ||
Sbjct 61 GAAGCAAGAGAACATTTGAAACAATCACTCGTC-GAACTGTCTAGATTACAGGAATGTTT 119
Query 145 CAACACCATTCTTTTGTCAGAAGAACAACAAATAATACCGCATTA---TTACTCAGAAAC 201
|||||| ||||||||||| ||||| |||| | |||||| ||||| ||||||||||||
Sbjct 120 CAACACTATTCTTTTGTCCGAAGACCAAC--A-AATACCCCATTATTCTTACTCAGAAAC 176
Query 202 CACTGACGAAACCGCCGATCATC-AAAAC--TATAGTTACAATAACTTCTCTAGCGATTC 258
||| ||||||||| ||||||||| ||||| |||||||||||||||||||| | ||| ||
Sbjct 177 CACAGACGAAACCCCCGATCATCAAAAACTGTATAGTTACAATAACTTCTCCAACGAGTC 236
Query 259 TCCTTCGCGATTCTCGTCCGCATCGTCGATGGATCTCGTCTCTAACTCAACTGTGTATTC 318
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 237 TCCTTCGCGATTCTCGTCCGCATCGTCGATCGATCTCGTCTCTAACTCAACTGTCTATTC 296
Query 319 CTCGCCGGAGACCTATGATTCTGATTGTTACAGCATCCGGTCGAAT-CAGATGGGTTTTG 377
||||||||||||||| || ||||||||||||||| ||||| || | |||||||||||||
Sbjct 297 CTCGCCGGAGACCTACGACTCTGATTGTTACAGCCTCCGGACG-TTGCAGATGGGTTTTG 355
Query 378 CATTTCAGGAAAAGGAAGATTTTGAGACCCTTGTGCTGGAGAATATAGGACTCGGAAGAG 437
||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CATTTGAGGAGAAGAAAGATTTTGAGACCCTTGTGCTGGAGAATATAGGACTCGGAAGAA 415
Query 438 TGTTGCCGGAGAATGGTAAGTTCCAGCAAGCTGTCATTGAAGCTGGATCGTTGGTTGAGT 497
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 416 TGTTGCCGGAGAACGGTAAGTTCCAGCAAGCTATCATTGAAGCTGGATCGTTGGTTGACT 475
Query 498 CATTGTTCATAACCGGTCCGATTCCAAAATGGAGAAATCCTCCGGTTCAAATGTTGAGTC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CATTGTTCATAACCGGTCCGATTCCAAAATGGAGAAATCCTCCGGTTCAAATGTTGAGTC 535
Query 558 AAAGACCGGTTCTAAGTAATTCTATTGGAAAATGGAATTATGGTGGTCAGGGGATCCTAA 617
|||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 536 AAAGACCGCTTCTGAGTCATTCTATCGGAAAATGGAATTATGGTGGTCAGGGGATCATAA 595
Query 618 ACCGGTCTTTCTCCGGCAAAATGCCACGGTTCAGCTTGATGCCATAA 664
||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 596 ACCGGTCTTTCTCTGGCAAAATGCCACGGTTAAGCTTGATGCCTTAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5