BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940460

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   595    8e-170


> AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting 
protein 4, defence response (InterPro:IPR008700); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:3106320-3107829 FORWARD 
LENGTH=693
Length=693

 Score =  595 bits (322),  Expect = 8e-170
 Identities = 365/385 (95%), Gaps = 6/385 (2%)
 Strand=Plus/Plus

Query  1    TATCTGTTGACTCAAACCATATGGAAGACGATCGAAAAGAGAAGAACACTCCATGGCTAT  60
            |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  164  TATCTGTTGAATCAAATCATATGGAAGACGATCGAAAAGAGAAGAACACTCCGTGGCTAT  223

Query  61   CAGTGCCACAGTTTGGTGATTGGGACCAAAAAGGAGGAGGAGGAACAATGCCTGATTACT  120
            ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||
Sbjct  224  CAGTGCCACAGTTTGGTGATTGGGACC-AAAA--AGGAGGAGGAACAATGCCTGATTACT  280

Query  121  CTATGGATTTCACTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  CTATGGATTTCACTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAG  340

Query  181  CTAGTTTAGGCAATGAGGAAGAGCTCATTAAGCCACCCGAGTCAGCAACATCAACTGCTA  240
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  341  CCAGTTTAGGCAATGAGGAAGAGCTCATTAAGCCACCCGAGTCAGCAACATCAACTGCTG  400

Query  241  ATCTCACGACGGTCCAGAGCGAAAACCAACGAGAGTTCTCTCCCAGCCACCATCACCACC  300
            | || || |||||||| || ||||||||||||||||||||||||||||||||||| ||  
Sbjct  401  AGCTTACCACGGTCCAAAGTGAAAACCAACGAGAGTTCTCTCCCAGCCACCATCATCA--  458

Query  301  AACCCCATTCTCCTTCTACGAGGAGAAGCATCTTCAGCTGCTTCAACTGCTGCGTTAAAG  360
            | || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  459  A-CCACATTCTCCTTCTACGAGGAGAAGTATGTTCAGCTGCTTCAACTGCTGCGTTAAAG  517

Query  361  CTTGAAGATTTCTTCTTGAGCAAAG  385
            |||||||||||||||||||||||||
Sbjct  518  CTTGAAGATTTCTTCTTGAGCAAAG  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18196925138


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5