BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940462
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09970.1 | Symbols: CYP78A7 | cytochrome P450, family 78, su... 2595 0.0
> AT5G09970.1 | Symbols: CYP78A7 | cytochrome P450, family 78,
subfamily A, polypeptide 7 | chr5:3111945-3114239 FORWARD LENGTH=2159
Length=2159
Score = 2595 bits (1405), Expect = 0.0
Identities = 1573/1654 (95%), Gaps = 12/1654 (1%)
Strand=Plus/Plus
Query 1 AAGTACATCCACCCaaaaaaaTGGAGTTGATGAATTTGGCATCAAAAGAAACAAGCTATT 60
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 277 AAGTACATCAACCCAAAATAATGGAGTTGATGAATTTGGCTTCAAAAGAAACAAGCTATT 336
Query 61 GGATGATCGCACTGCCTGCCGTTTTTGGATCCCAAAACCTACATGATGTTTCCATCATCG 120
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 337 GGATGATTGCACTGCCTGCCGGTTTTGGATCCCAAAACCTACATGATGTTTCCACCCTAG 396
Query 121 GCTATCTCTTCCTCGCCGTCGTTTCTCTCTCTATACTCACGTGGGCTCTTGCCGGAGGCG 180
||||||| ||||| |||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 397 GCTATCTATTCCTTGCCGTCGTTTTTCTCTCTATAGTCACGTGGGCTCTCGCCGGAGGCG 456
Query 181 GTGGTGTCGCTTGGAAGAACGGCCGTAACCGGTTGGGTCGTGTTGCGATCCCGGGTCCTC 240
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 457 GTGGTGTCGCTTGGAAGAACGGCCGTAACCGGTTGGGTCGTGTCGCGATCCCTGGTCCTC 516
Query 241 GGGGAATACCAGTATTCGGCAGTCTTTTCACTCTCAGCCGTGGCTTGGCCCATCGGACTT 300
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 517 GTGGCATACCAGTATTCGGCAGTCTTTTCACTCTCAGCCGAGGCTTGGCTCATCGGACGT 576
Query 301 TAGCCGCCATGGCTTGGAGCCGAGCCAACATTGAGATTATGGCTTTCAGCCTCGGTTCTA 360
|||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
Sbjct 577 TAGCAGCCATGGCTTGGAGCCGAGCCAACACTGAGATTATGGCTTTTAGCCTTGGTTCAA 636
Query 361 CGCCGGTTATCGTGGCTTCTGAGCCAAACACAGCTCGCGAGATTCTGATGTCGCCTCACT 420
|||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 637 CGCCGGTTATCGTGGCTTCTGAACCAAACATAGCTCGTGAGATTCTGATGTCGCCTCACT 696
Query 421 TCGCGGACCGGCCGGTTAAGCAGTCTGCTAAGAGCCTCATGTTCAGCCGAGCCATAGGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 697 TCGCGGACCGGCCGGTTAAGCAGTCTGCTAAGAGCCTCATGTTCAGCCGAGCCATAGGTT 756
Query 481 TCGCCCCAAACGGGGCTTACTGGCGCACGTTAAGAAGGATCGCATCGACTCATCTATTCG 540
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 757 TCGCCCCAAACGGGACTTACTGGCGCATGTTAAGAAGGATCGCATCGACTCACCTATTTG 816
Query 541 CTCCTCGGCGTATCTTAGCACATGAAGCTGGACGCCACCTAGACTGCGCTGAAATGGTGA 600
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 817 CTCCTCGGCGTATCTTAGCACACGAAGCTGGGCGCCAGCTAGACTGCGCTGAAATGGTGA 876
Query 601 AAGCTGTGTCAGCGGAGCAAAACGGCGCTGGATCAGTCGTTTTAAGGAAACACTTGCAAC 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 877 AAGCTGTGTCAGTGGAGCAAAACGGCGCTGGATCAGTCGTTTTAAGGAAACACTTACAAC 936
Query 661 TAGCCGCCTTGAACAACATCATGGGGAGTGTTTTTGGGAGAAGATACGATCCTCTGGCTC 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 937 TAGCCGCCTTGAACAACATCATGGGAAGTGTTTTTGGGAGAAGATACGATCCTCTGGCTC 996
Query 721 AGAAAGAGGATCTTGATGAGCTTACATCAATGGTCAGGGAAGGGTTCGAGCTTTTAGGTG 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 997 AGAAAGAGGATCTTGATGAGCTTACATCAATGGTTAGGGAAGGGTTCGAGCTTTTGGGTG 1056
Query 781 CTTTTAATTGGTCCGATTATCTTCCATGGCTCGGTTATTTCTATGACTCGATTCGCTTAA 840
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1057 CTTTTAATTGGTCTGATTATCTTCCATGGCTCGGTTATTTCTACGACTCAATTCGTTTAA 1116
Query 841 ACCAACGTTGCTCAGATCTCGTTCCTCGAATTAGAACCCTCGTCAAGAAAATCATCGACG 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1117 ACCAACGTTGCTCAGATCTCGTCCCTCGAATTAGAACCCTCGTCAAGAAAATCATCGACG 1176
Query 901 AACACCGAGTTAGTAACTCTGAGAAGAAAAGAGACATTGGAGATTTCGTTGATGTCTTAT 960
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1177 AACATCGAGTTAGTAACTCTGAGAAGAAAAGAGACATTGGAGATTTTGTTGATGTCTTAT 1236
Query 961 TGTCTTTAGACGGTGATGAGAAGCTTCGAGAAGATGACATGATCGCCGTTTTATGGGAGA 1020
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1237 TGTCTTTAGACGGTGATGAGAAACTTCAAGAAGATGACATGATCGCCGTTTTATGGGAGA 1296
Query 1021 TGATTTTTCGAGGGACAGATACAACGGCGTTATTAACGGAGTGGACCATGGCTGAGCTAG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1297 TGATTTTTCGAGGGACAGATACAACGGCGTTATTAACGGAGTGGACCATGGCCGAGCTAG 1356
Query 1081 TACTGAACCCTAACGTGCAAACCAAGTTACGAGACGAGATTGTAACCGCTGTG----A-G 1135
||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |
Sbjct 1357 TACTGAACCCTAACGTGCAAACCAAGTTACGAGACGAGATTTTAACTGCTGTGGGCGACG 1416
Query 1136 -CG---ACGGAGACGTGGCAGATGCTGACCTGGCAAAACTCCCGTACCTGAGCGCAGTGG 1191
|| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1417 GCGCCGACGGAGACGTGGCAGATGCTGACCTGGCAAAACTCCCGTACCTAAACGCAGTGG 1476
Query 1192 TGAAGGAAACTCTAAGGCTGCATCCTCCTGGACCACTGCTTTCATGGGCTCGTCTTTCCA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TGAAGGAAACTCTAAGGCTGCATCCTCCTGGACCACTGCTTTCATGGGCTCGTCTTTCCA 1536
Query 1252 CGTCAGACGTCCAGCTCAACAATGGCATGGT-AGTTCCAAAGGGAACTACGGCGATGGTC 1310
|||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||
Sbjct 1537 CGTCAGACGTCCAGCTCAGCAATGGCATGGTGA-TTCCAAAGGGAACTACAGCGATGGTC 1595
Query 1311 AACATGTGGGCTATAACTCACGACCAGACGGTATGGTCCGACCCGCTAAAGTTCGACCCG 1370
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1596 AACATGTGGGCTATAACCCACGACCAGACTGTATGGTCCGACCCGCTAAAGTTTGACCCG 1655
Query 1371 GAGAGGTTCACTGGGAATGCTGACGTGGATATTCGTGGTGGGGATCTAAGGCTTGCGCCG 1430
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1656 GAGAGATTCACTGGGAATGCTGACATGGATATTCGTGGTGGGGATCTAAGGCTTGCACCG 1715
Query 1431 TTTGGAGCCGGTAGGAGGGTGTGTCCGGGGAAGAACATGGGGTTAGCTACTGTGACTCGG 1490
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1716 TTTGGAGCCGGTAGGAGAGTGTGTCCGGGGAAGAACATGGGGCTAGCTACTGTGACTCGG 1775
Query 1491 TGGGTGGCTGAGTTGGTGCGACGGTTCGAGTGGGGTCAGGATCATACCGAGCCAGTTGAT 1550
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1776 TGGGTGGCTGAGTTGGTACGACGGTTCGAGTGGGGTCAGGATCAGACCGAGCCAGTTGAT 1835
Query 1551 CTTGGTGAGGTCTTGAAGCTTTCTTGTGAGATGGAGCATCCGTTACGTGCTGTTGTAACG 1610
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1836 CTTGGTGAGGTCTTGAAGCTTTCTTGTGAGATGGAGCATCCGTTACGTGCCGTTGTAACG 1895
Query 1611 GAATTATTTTAAGTCAAAAA-GGGCTAAGTAGGG 1643
||| |||||||||||||||| |||||||||||||
Sbjct 1896 GAAATATTTTAAGTCAAAAAAGGGCTAAGTAGGG 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81174281265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5