BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940470

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10040.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   320    4e-87
  AT3G10040.1 | Symbols:  | sequence-specific DNA binding transcr...  54.7    4e-07


> AT5G10040.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G65207.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:3143723-3144157 FORWARD LENGTH=435
Length=435

 Score =  320 bits (173),  Expect = 4e-87
 Identities = 215/234 (92%), Gaps = 7/234 (3%)
 Strand=Plus/Plus

Query  21   ATGGATTCATCGGCGGACATAGCAATATTAGTGGCAGAGGAATGTGAGCACAAGGTGAAT  80
            |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct  1    ATGGATTCATCGGCGGACATAGCAATATTAGTGGCAGATGAATGTAACCAAAAGGTGAAT  60

Query  81   TTAACGGCAGAGAAAACATCGAATTCAGCGGAGGTTGGGTGGTTGATGATGTT-GGAGAT  139
              ||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||
Sbjct  61   ACAACGGCAGAGAAAGCATCGAATACAGCGGAGGTTGGGTGGTTGATGATGTTTGG-GAT  119

Query  140  TGAGGAGAAGAAGATTGAAAGTTTGATGAGGAAATTTGAA-CTTAAATCTCAGTTTGCTG  198
            |||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct  120  TGAGGAGAAGAAGATTGAAAGTCTGATGAGGAAATTTGAAGCT-AAATCTCAGTTTGCTG  178

Query  199  TGGCTGTTTCTAGTGGCTTTTTCTCTGCTTAATTAT-TTTACATCGTTGTACTA  251
            |||| ||||||||||||||||| ||||||||| ||| ||| |||| ||||||||
Sbjct  179  TGGCGGTTTCTAGTGGCTTTTT-TCTGCTTAACTATGTTT-CATCCTTGTACTA  230


> AT3G10040.1 | Symbols:  | sequence-specific DNA binding transcription 
factors | chr3:3096415-3098071 REVERSE LENGTH=1657
Length=1657

 Score = 54.7 bits (29),  Expect = 4e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  128   GATGTTGGAGATTGAGGAGAAGAAGATTG  156
             |||||||||||||||||||||||||||||
Sbjct  1246  GATGTTGGAGATTGAGGAGAAGAAGATTG  1274



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11410779023


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5