BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940479

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:62259...   158    5e-38
  AT4G35530.1 | Symbols:  | phosphatidylinositolglycan-related | ...   126    1e-28
  AT5G05435.1 | Symbols:  | other RNA | chr5:1606552-1607656 FORW...  95.3    4e-19
  AT4G16150.1 | Symbols:  | calmodulin binding;transcription regu...  82.4    3e-15
  AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-16...  65.8    3e-10


> AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6225956-6228132 
FORWARD LENGTH=1926
Length=1926

 Score =  158 bits (85),  Expect = 5e-38
 Identities = 137/160 (86%), Gaps = 12/160 (8%)
 Strand=Plus/Plus

Query  23   GAGATCGCGATCA-GGTGTTCTTCGAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGA  81
            ||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct  333  GAGATCGCGAT-ACGTTGCTCTTCGAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGA  391

Query  82   CG-TTCCTCCGTTTCTCAATTCCTCCCCAAAATTTAAATCG-T-G----T--AAAATTAT  132
            || ||| |||||||||||| ||| | ||||||| ||||||| | |    |  ||||||||
Sbjct  392  CGCTTC-TCCGTTTCTCAAATCCACTCCAAAATCTAAATCGCTCGAGAGTGTAAAATTAT  450

Query  133  TCGTTGGGCTTCCACTGGACACAGTTTTAGACTGCAACAA  172
            | |||||||||||  | |||||||||| ||||||||||||
Sbjct  451  TTGTTGGGCTTCCGTTAGACACAGTTTCAGACTGCAACAA  490


> AT4G35530.1 | Symbols:  | phosphatidylinositolglycan-related 
| chr4:16871734-16873652 REVERSE LENGTH=1151
Length=1151

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 74/77 (96%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  227  AGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAGTGGTTTCTTAGTTATGCTACAAAGTCG  286
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  573  AGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAGTGGTTTCTTGGTTATGCTACATAGTCG  632

Query  287  CAAGTTCGTCAACAAAG  303
            |||||||||||| ||||
Sbjct  633  CAAGTTCGTCAAGAAAG  649


> AT5G05435.1 | Symbols:  | other RNA | chr5:1606552-1607656 FORWARD 
LENGTH=626
Length=626

 Score = 95.3 bits (51),  Expect = 4e-19
 Identities = 55/57 (96%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  172  ACGTTGATTCCGGTAGGCTTATCGGCTCTGAGATTCATGGATTCCATATTTTGCAAG  228
            ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  115  ACGTTGATTTCGGTAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTGCAAG  171


> AT4G16150.1 | Symbols:  | calmodulin binding;transcription regulators 
| chr4:9148059-9153292 FORWARD LENGTH=3182
Length=3182

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 52/56 (93%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  173  CGTTGATTCCGGTAGGCTTATCGGCTCTGAGATTCATGGATTCCATATTTTGCAAG  228
            |||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||
Sbjct  175  CGTTGATTCCGGCAAGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTACAAG  230


> AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-1606703 
REVERSE LENGTH=477
Length=477

 Score = 65.8 bits (35),  Expect = 3e-10
 Identities = 37/38 (97%), Gaps = 0/38 (0%)
 Strand=Plus/Minus

Query  172  ACGTTGATTCCGGTAGGCTTATCGGCTCTGAGATTCAT  209
            ||||||||| ||||||||||||||||||||||||||||
Sbjct  38   ACGTTGATTTCGGTAGGCTTATCGGCTCTGAGATTCAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18448263883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5