BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940484
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-... 1020 0.0
> AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-box
transcription factor family protein | chr5:3173497-3179448
REVERSE LENGTH=927
Length=927
Score = 1020 bits (552), Expect = 0.0
Identities = 606/632 (96%), Gaps = 4/632 (1%)
Strand=Plus/Plus
Query 1 CCCTCTCGGAGACAGAAGCCATGGGGAGaaaaaaaCTAGAAATCAAGCGAATTGAGAACA 60
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 92 CCCTCTCGGAG--AGAAGCCATGGGAAGAAAAAAACTAGAAATCAAGCGAATTGAGAACA 149
Query 61 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 209
Query 121 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCTGCTTCCGGCAAGC 180
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 210 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGC 269
Query 181 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 270 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGC 329
Query 241 ATGCTGATGATCTTAAAGCCTTGGAT-ATTCAGTCAAAAGCTCTGAACTATGGTTCACAC 299
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 330 ATGCTGATGATCTTAAAGCCTTGGATCAT-CAGTCAAAAGCTCTGAACTATGGTTCACAC 388
Query 300 CATGAGCTACTTGAACTTGTGGAAAGCAAGCTTGTGGGATCAAATGTCAATAATGTGAGT 359
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 389 TATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGT 448
Query 360 GTCGATACTCTTGTTCAACTGGAGGAACACTTTGAGACTGCCCTCTCCGTAACTAGAGCC 419
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 449 ATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCC 508
Query 420 AAGAAGACAGAACTAATGTTGAAGCTTGTTGAGAACCTCAAAGAAAAGGAGAAATTGCTG 479
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 509 AAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTG 568
Query 480 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAAGAATCATCATGTGGGAGCAGAA 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 569 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAA 628
Query 540 GCTGAGATGGAGATTTCACCTGCAGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCG 599
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 629 GCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCA 688
Query 600 CTGCTTAATTAGCCACCTTTAATCGGCGGTTG 631
|| |||||||||||||||| ||||||||||||
Sbjct 689 CTACTTAATTAGCCACCTTAAATCGGCGGTTG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5