BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940488
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10180.1 | Symbols: AST68, SULTR2;1 | slufate transporter 2;... 3439 0.0
> AT5G10180.1 | Symbols: AST68, SULTR2;1 | slufate transporter
2;1 | chr5:3193144-3197120 FORWARD LENGTH=2417
Length=2417
Score = 3439 bits (1862), Expect = 0.0
Identities = 2030/2113 (96%), Gaps = 4/2113 (0%)
Strand=Plus/Plus
Query 1 AATGCTCAATCACAGCTTCTTCATAGTTAAACTTCCTCACAACGTCAAAAATCGAGAAGA 60
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 20 AATGCTCAATCAAAGCTTCTTCATAGTTAAACTTCCACACAACGTCAAAACTCGAGAAGA 79
Query 61 AGATGAAAGAGAGAGATTTAGAGAGTTTTGAATCTCTCTCACATCAAGTTCTCCCAAACA 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 80 AGATGAAAGAGAGAGATTCAGAGAGTTTTGAATCTCTCTCACATCAAGTTCTCCCAAACA 139
Query 121 CTTCAAATTCAACACACATGATCCAGATGGCCATGGCCAGCTCAGGTTCATCTGCAGCCG 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 140 CTTCAAATTCAACACACATGATCCAGATGGCCATGGCCAACTCAGGTTCATCTGCAGCCG 199
Query 181 CACAAGCCGGTCAAGACCAACCTGACCGGTCAAAGTGGCTGCTTGACTGTCCTGAACCAC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CACAAGCCGGTCAAGACCAGCCTGACCGGTCAAAGTGGCTGCTTGACTGTCCTGAACCAC 259
Query 241 CTAGCCCGTGGCATGAGCTCAAGAGACAAGTCAAAGGCTCTTTCCTAACCAAAGCCAGAA 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 260 CTAGCCCGTGGCATGAGCTCAAAAGACAAGTCAAAGGCTCTTTCCTAACCAAAGCCAAAA 319
Query 301 GGTTCAAGTCACTTCAAAAACAGCCTCTCCCAAAACGAATCCTCTCCATCCTCCAAGCCA 360
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 320 AGTTCAAGTCACTTCAAAAACAGCCTTTCCCAAAACAAATCCTCTCTGTCCTCCAAGCCA 379
Query 361 TTTTCCCAATCTTCGGTTGGTGCAGAAACTATAATCTCACCATGTTCAAGAACGATCTCA 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 380 TTTTCCCAATCTTCGGTTGGTGCAGAAACTATAAACTCACCATGTTCAAGAACGATCTCA 439
Query 421 TGGCTGGTTTAACCCTCGCCAGCCTCTGCATTCCTCAGAGCATTGGTTATGCAACTCTTG 480
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 440 TGGCTGGTTTAACCCTCGCTAGCCTCTGCATTCCGCAGAGCATTGGTTATGCAACTCTTG 499
Query 481 CAAAGCTTGATCCTCAATATGGCCTATATACGAGTGTCGTACCACCATTGATATACGCAT 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 500 CAAAGCTTGATCCTCAATATGGCCTATATACGAGTGTGGTACCACCATTGATATATGCAT 559
Query 541 TGATGGGGACATCAAGAGAGATAGCAATCGGACCAGTGGCTGTAGTATCTCTTCTTATAT 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 560 TGATGGGGACATCAAGAGAGATAGCAATCGGACCGGTGGCTGTAGTATCTCTTCTTATAT 619
Query 601 CCTCAATGTTGCAGAAACTCATCGATCCAGAAACAGATCCCTTGGGATACAAGAAACTGG 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CTTCAATGTTGCAGAAACTCATCGATCCAGAAACAGATCCCTTGGGATACAAGAAACTGG 679
Query 661 TCCTAACCACAACCTTTTTCGCCGGGATCTTCCAAGCTTCTTTCGGGTTATTCAGATTAG 720
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 680 TCCTAACCACAACCTTCTTCGCCGGGATCTTCCAAGCTTCTTTCGGTTTATTCAGGTTAG 739
Query 721 GGTTTCTGGTGGATTTTCTGTCGCACGCAGCCATAGTAGGGTTCATGGGTGGTGCAGCCA 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 740 GGTTTCTGGTGGATTTTCTGTCGCACGCAGCCATAGTTGGGTTCATGGGTGGTGCAGCCA 799
Query 781 TTGTAATTGGACTCCAACAGCTCAAAGGTTTGCTTGGTATCACTAACTTCACCACCAACA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 800 TTGTAATTGGACTCCAACAGCTTAAAGGTTTGCTTGGTATCACTAACTTCACCACCAACA 859
Query 841 CTGACATTGTCTCTGTTCTTCGAGCTGTCTGGCGATCTTGTCAACAACAATGGAGCCCCC 900
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 860 CTGACATTGTCTCTGTTCTTCGAGCTGTCTGGAGATCTTGTCAACAACAATGGAGCCCTC 919
Query 901 ACACTTTCATCCTCGGATGTTCCTTCCTCAGTTTTATCCTTATCACTCGCTTCATCGGGA 960
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 920 ACACTTTCATCCTCGGATGTTCTTTCCTCAGTTTTATCCTTATTACTCGCTTCATCGGGA 979
Query 961 AGAAGTACAAGAAGCTGTTTTGGCTACCGGCAATAGCTCCGTTGATCGCCGTGGTAGTGT 1020
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AGAAGTATAAGAAGCTGTTTTGGCTACCGGCAATAGCTCCGTTGATCGCCGTGGTAGTGT 1039
Query 1021 CAACGCTAATGGTGTTTCTGACTAAAGCCGACGAGCATGGCGTGAAAACAGTGAAGCACA 1080
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1040 CAACACTAATGGTGTTTCTGACTAAAGCCGACGAGCATGGTGTGAAGACAGTGAGGCACA 1099
Query 1081 TCAAAGGAGGTCTAAATCCAATCTCCATTCACGATCTCGACTTTAATACTCCTCATCTCG 1140
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1100 TCAAAGGAGGTCTTAATCCAATGTCCATTCAGGATCTCGACTTTAATACTCCTCATCTCG 1159
Query 1141 GACAAATCGCTAAAATCGGATTAATCATTGCCACTGTTGCTTTAACCGAGGCGATTGCGG 1200
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1160 GACAAATCGCTAAAATCGGATTAATCATTGCCATTGTTGCTCTAACCGAGGCGATTGCGG 1219
Query 1201 TGGGGAGGTCGTTCGCCGGAATTAAAGGGTACAGACTCGATGGAAACAAAGAAATGGTGG 1260
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1220 TGGGGAGGTCGTTCGCCGGAATAAAAGGGTACAGACTCGATGGAAACAAAGAAATGGTGG 1279
Query 1261 CCATTGGATTTATGAATGTTCTCGGTTCCTTCACATCTTGTTACGCTGCTACTGGTTCAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCATTGGATTTATGAATGTTCTCGGTTCCTTCACATCTTGTTACGCTGCTACTGGTTCAT 1339
Query 1321 TCTCTCGGACCGCCGTGAACTTTGCGGCTGGATGTGAGACAGCAATGTCCAACATTGTTA 1380
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1340 TCTCTCGGACGGCCGTGAATTTTGCGGCAGGATGTGAGACAGCAATGTCCAACATTGTTA 1399
Query 1381 TGGCGGTTACGGTGTTTGTAGCACTCGAGTGTCTAACGAGGCTTCTTTACTATACTCCAA 1440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1400 TGGCGGTTACGGTGTTTGTAGCACTCGAGTGTCTAACGAGGCTTCTCTACTATACTCCAA 1459
Query 1441 TCGCCATTCTTGCTTCAATTATTCTCTCAGCACTTCCGGGACTTATCAACATTAATGAGG 1500
||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1460 TCGCCATCCTCGCTTCAATAATTCTCTCAGCACTTCCGGGACTAATCAACATTAACGAGG 1519
Query 1501 CTATTCACATTTGGAAAGTCGATAAATTCGATTTTCTGGCTCTCGTTGGAGCTTTCTTTG 1560
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1520 CTATTCACATTTGGAAAGTCGATAAATTCGATTTTCTTGCTCTCATTGGAGCTTTCTTTG 1579
Query 1561 GTGTTTTATTCGCTTCTGTTGAGATCGGACTTCTTGTCGCGGTGGTTATTTCGTTTGCCA 1620
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 GTGTTTTGTTCGCTTCCGTTGAGATCGGACTTCTTGTCGCGGTGGTTATTTCGTTTGCCA 1639
Query 1621 AGATCATACTCATATCAATTCGTCCAGGGATAGAAACGCTCGGAAGAATGCCCGGGACCG 1680
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1640 AGATCATACTCATATCAATTCGTCCAGGGATAGAAACGCTTGGAAGAATGCCCGGGACCG 1699
Query 1681 ATACTTTTGCAGATACTAATCAATATCCTATGACGGTTAAGACTCCCGGAGTGTTAATTT 1740
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 ATACTTTTACAGATACTAATCAATATCCTATGACGGTTAAGACTCCCGGAGTGTTGATTT 1759
Query 1741 TTCGTGTCAAGTCTGCATTGTTGTGCTTTGCTAATGCCAGTTCAATCGAGGAAAGGATTA 1800
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1760 TTCGTGTCAAGTCTGCATTGTTGTGCTTTGCCAATGCCAGTTCAATTGAGGAAAGGATTA 1819
Query 1801 TGGGATGGGTCGATGAGGAGGAAGAAGAAGAAAACACAAAGAGCAATGGGAAGAGAAAAA 1860
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 1820 TGGGATGGGTCGATGAGGAAGAAGAAGAAGAAAACACAAAGAGCAATGCCAAGAGAAAGA 1879
Query 1861 TCCTCTTTGTAATCCTTGATATGTCAAATTTAATAAACGTCGATACATCGGGGATTACTG 1920
||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 1880 TCCTCTTTGTAGTCCTTGATATGTCAAGTTTGATCAACGTCGATACATCGGGGATTACTG 1939
Query 1921 CTTTGGTGGAGCT-CAATAACAAGCTGATCCAAACTGGTGTTGAGCTAGTGATCGTTAAC 1979
||||| |||| || || |||||| | ||| |||||||||||||||||||||||||||||
Sbjct 1940 CTTTGCTGGAACTGCA-TAACAAATTAATCAAAACTGGTGTTGAGCTAGTGATCGTTAAC 1998
Query 1980 CCGAAATGGCAAGTAATCCACAAGCTGAATCAAGCAAAGTTTGTC-AGCAGAATCGGTGG 2038
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1999 CCGAAATGGCAAGTAATCCACAAGCTGAATCAAGCAAAGTTCGTCGA-CAGAATCGGTGG 2057
Query 2039 CAAGGTTTATTTGACAATCGGGGAAGCTCTCGATGCTTGCTTTGGATTAAAAGTTTAAGA 2098
||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2058 CAAAGTTTACTTGACGATCGGCGAAGCTCTTGATGCTTGCTTTGGATTAAAAGTTTAAGA 2117
Query 2099 AACAATTTTCAAA 2111
|||| ||||||||
Sbjct 2118 AACAGTTTTCAAA 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104919139050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5