BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940489
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10190.1 | Symbols: | Major facilitator superfamily protein... 2320 0.0
> AT5G10190.1 | Symbols: | Major facilitator superfamily protein
| chr5:3199133-3201363 FORWARD LENGTH=1762
Length=1762
Score = 2320 bits (1256), Expect = 0.0
Identities = 1426/1509 (94%), Gaps = 7/1509 (0%)
Strand=Plus/Plus
Query 4 CGCCGCGGTGAGAAGCGATGAAGTCGGAGACTTTAACATTAGTTCTGGTGTATCTCGCCG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CGCCGCGGTGAGAAGCGATGAAGTCGGAGACTTTAACATTAGTTCTGGTGTATCTCGCCG 115
Query 64 GAATCATGGAGAGAGCCGACGAGTCTCTGCTTCCAGGAGTTTACAAAGAAGTAGGAGATG 123
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 116 GAATCATGGAGAGAGCCGATGAGTCTCTGCTTCCAGGAGTTTACAAAGAAGTTGGAGATG 175
Query 124 CTCTACACGTGGATCCCACAGCTCTTGGAAC-TCTAACTCTGTTCCGGTCTATTGTTCAG 182
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 176 CTCTACACGTGGATCCCACAGCTCTTGGAACAT-TAACTCTGTTCCGCTCTATTGTTCAG 234
Query 183 TCTTCTTGTTACCCTTTAGCCGCTTACTTGTCTTCTAGACATAACCGAGCTCACGTCATC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCTTCTTGTTACCCTTTAGCCGCTTACTTGTCTTCTAGACATAACCGAGCTCACGTCATC 294
Query 243 GCTCTCGGTGCTTTCCTCTGGGCTACCGCCACTTTTCTCGTCGCCGTCTCCACTACTTTC 302
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 295 GCTCTCGGTGCTTTCCTCTGGGCCACTGCCACTTTCCTCGTCGCCGTCTCCACTACTTTC 354
Query 303 TTCCAGGTGGCAGTATCGAGAGGGTTGAACGGGATAGGGCTCGCCATCGTGACACCCGCG 362
||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 355 TTCCAGGTGGCAGTATCAAGAGGCTTGAACGGGATAGGGCTAGCCATTGTGACACCCGCG 414
Query 363 ATTCAGTCACTGGTCGCTGACTCAACCGAAGACAATAACCGTGGCATGGCATTTGGATGG 422
|||||||| || |||||||||||||| || ||| |||||||||| ||||||||||| |||
Sbjct 415 ATTCAGTCCCTAGTCGCTGACTCAACTGATGACTATAACCGTGGGATGGCATTTGGGTGG 474
Query 423 TTAGGATTCACATCAAACATTGGTTCCATACTTGGCTATGTCTTTTCCATCCTCTTTGCC 482
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 475 TTAGGATTCACATCAAACATTGGTTCCATACTTGGCTATGTATGTTCCATCCTCTTTGCC 534
Query 483 TCCAAATCTTTCAATGGTGTCGCTGGATGGAGAATCGCTTTCCTTTTGGTAGCATTCGTT 542
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 TCAAAATCTTTCAATGGTGTCGCTGGATGGAGAATCGCTTTCCTTTTGGTAGCAGTCGTT 594
Query 543 AGCGTGATAGTAGGCATTTTGGTCCGCCTCTTCGCAACAGATCCTCACTACAGCGACAGA 602
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 AGCGTGATAGTAGGCATTTTGGTCCGTCTCTTCGCAACAGATCCTCACTACAGCGACAGA 654
Query 603 AAAATCACTAAACATGTCAAAGACAAACCTTTCTGGTCAGACATAAGAGATCTATTGCAG 662
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 655 AAGATCACAAAACATGTCAAAGACAAACCTTTCTGGTCAGACATAAGAGATCTATTGAAA 714
Query 663 GAAGCAAAGATGGTGATAAAGATTCCGTCTTTCCAAATCTTTGTCGCTCAGGGAGTTTCT 722
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAAGCTAAGATGGTGATAAAGATTCCGTCTTTCCAAATCTTTGTCGCTCAGGGAGTTTCG 774
Query 723 GGTTCCTTCCCCTGGTCAGCTTTCGCTTTTGCACCATTGTGGCTAGAACTCATTGGTTTC 782
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 GGTTCTTTCCCTTGGTCAGCTTTGGCTTTTGCACCATTGTGGCTAGAACTCATTGGTTTC 834
Query 783 TCCCACAAAACAACTGCGGTTCTCGTAACTCTTTTCACCATTTCGTGCTCTCTTGGAGGT 842
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 835 TCCCACAAAACAACCGCGGTTCTCGTGACTCTTTTCACCATTTCTTGCTCTCTTGGAGGT 894
Query 843 TTATTTGGAGGATACATGGGAGATACTCTCGCCAAGAAGTTCCCAAATGCCGGTAGGATA 902
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 895 TTGTTTGGAGGATACATGGGAGATACTCTCGCCAAGAAGTTCCCAAATGGCGGTAGGATT 954
Query 903 ATCCTCTCTCAGATAAGCTCTGCCTCAGCAATTCCTTTAGCTGCGATTTTGCTTATCGGA 962
||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 955 TTCCTCTCTCAGGTAAGCTCTGGCTCGGCAATTCCTTTAGCTGCGATTTTGCTTATCGGA 1014
Query 963 TTACCTGATGATCCCTCCACTGCCTTTAGCCACGGTCTGGTTCTTGTCATCATGGGATTG 1022
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTACCTGATGATCCCTCCACGGCCTTTAGCCACGGTCTGGTTCTTGTCATCATGGGATTA 1074
Query 1023 TGCATCTCATGGAACGGTCCAGCTACAAACGGTCCAATATTTGCAGAGATTGTTCCTGAG 1082
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 TGCATCTCATGGAACGGTGCAGCTACAAACGGTCCAATATTTGCAGAGATAGTTCCTGAG 1134
Query 1083 AGAGCGCGGACCAGCATCTACGCATTAGACAGATCATTCGAGTCAATAT-TAGCATCTTT 1141
||||| || || ||||||||||| |||||||||||||||||||| || | |||| |||||
Sbjct 1135 AGAGCACGAACGAGCATCTACGCGTTAGACAGATCATTCGAGTCGAT-TCTAGCTTCTTT 1193
Query 1142 TGCTCCTCCTATAGTAGGGATGCTTGCTCAGAACATCTATGGCTTTAAACCGATCCCCAA 1201
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
Sbjct 1194 TGCTCCTCCTATAGTAGGGATGCTTGCTCAGAACATCTATGGATATAAACCAATCCCGGA 1253
Query 1202 AGGATCTTCAAGCTTGATCAAGATTGAAACAGACAGAGAGAACGCAGCATCGCTTGCTAA 1261
|||||| |||||| | |||||||||| ||||| |||| ||||||||||||||| |||||
Sbjct 1254 AGGATCCACAAGCTCGGTCAAGATTGATACAGATAGAGCGAACGCAGCATCGCTCGCTAA 1313
Query 1262 AGCACTCTACACAGCGATCGGGATTCCGATGGTGATCTGTTGCACAATCTACTCGTTCCT 1321
|||| | |||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 AGCATTATACACATCGATTGGGATCCCGATGGTGATCTGTTGCACAATCTACTCGTTCCT 1373
Query 1322 ATATTGCACGTACCCGAGGGACCGAGACAGAGCGAAAATGCAAGCCTTGATCGAGTCAGA 1381
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1374 ATATTGCACATACCCGAGGGACCGAGACAGAGCAAAAATGCAAGCCTTGATCGAGTCAGA 1433
Query 1382 GATGCAACAACTCAATgaagaagaagaagaagagaTTGAGGTGAAGTGTTTAGGAGCTGA 1441
||||||||||||||||||||| | ||||| ||||| || ||||||||||| ||||||||
Sbjct 1434 GATGCAACAACTCAATGAAGA-G--GAAGATGAGATCGAAGTGAAGTGTTTTGGAGCTGA 1490
Query 1442 AGAACACGATGAGACTTATTTGCTTAAGCAGCATCAGAATGAGAGTTAAGAACAGAGTCA 1501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGAACACGATGAGGCTTATTTGCTTAAGCAGCATCAGAATGAGAGTTAAGAACAGAGTCA 1550
Query 1502 AATGATGAT 1510
|||||||||
Sbjct 1551 AATGATGAT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5