BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940490
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10200.1 | Symbols: | ARM-repeat/Tetratricopeptide repeat (... 3133 0.0
> AT5G10200.1 | Symbols: | ARM-repeat/Tetratricopeptide repeat
(TPR)-like protein | chr5:3201518-3204709 FORWARD LENGTH=2517
Length=2517
Score = 3133 bits (1696), Expect = 0.0
Identities = 1858/1937 (96%), Gaps = 7/1937 (0%)
Strand=Plus/Plus
Query 1 GTTTTGGTTTTTTG-TTGTCAATGGATAAAGCTTCTTCACAAGAGTGTCCTTATCCAGGA 59
||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 260 GTTTTGG-TTTTTGTTTGTCAATGGATAAAGCTTCCTCACAAGAGTGTCCTTATCCAGGA 318
Query 60 TGTTTCTTCTGTGTAATGAAAGAAGGAAACCCAACTAAAAGAAGATCCTGCATTCTCAAA 119
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 319 TGTTTCTTCTGTGTAATGAAAGAAGGAAACCCGAGTAAACGAAGATCCTGCATTCTCAAA 378
Query 120 TTCTTTAGAGATCTTCCTTCTCAAGACGATGATGGTCAAGTTCTTCCCATTAGTGGTCTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTCTTTAGAGATCTTCCTTCTCAAGACGATGATGGTCAAGTTCTTCCCATTAGTGGTCTC 438
Query 180 TGGAACACAGCAATGGCTCACCCTAATGATCCTGAGTTCATTGAGCTTGGAATCTTTGAG 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGGAACACAGCAATGGCTCATCCTAATGATCCTGAGTTCATTGAGCTTGGAATCTTTGAG 498
Query 240 TGTATGTCTGCTTTGATATGGAAAGGACTTAAAAACAGGCGTTGGCTATCTCATGACCAG 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 499 TGTATGTCTGCTTTGATATGGAAAGGACTTAAAAACCGGCGTTGGCTATCTCATGACCAG 558
Query 300 AACATATACATTCCTTACTACGCGGCTCACATTATCGGGTCTTACACTATGAACATGGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AACATATACATTCCTTACTACGCGGCTCACATTATCGGGTCTTACACTATGAACATGGAA 618
Query 360 GAGTTTGCTGAGAGAGCTGTGGAAGCTGGTGTGATTGCTCCACTTGTTGAGCTTTTAAGA 419
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 619 GAGTTTGCTGAGAGAGCTGTAGAAGCTGGTGTGATTCCTCCACTTGTTGAGCTTTTAAGA 678
Query 420 GGTAGGCTTACTTGGGTCGAACAGAGAGTGGCGGTTCGTGCTTTAGGGCATTTAGCTACT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGTAGGCTTACTTGGGTTGAACAGAGAGTGGCGGTTCGTGCTTTAGGGCATTTAGCTACT 738
Query 480 TACCCGAGCACTTTTCCTGCCGTTGCGGATCACGGAGAGATCCTCGAGCTTGCGATACAA 539
|||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 739 TACCCGAGTACTTTTCCCGCTGTTGCGGATCACGGAGAGATCCTCGAGCTTGCTATACAG 798
Query 540 TTGGCAATGAGTTCGTTAGAAATAGTTTACTCTCACTTTTACCAGTATCCGGATCGAAGG 599
||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 799 TTGGCAATGAGTTCGTTGGAGATAGTTTATTCTCATTTTTACCAGTATCCGGATCGAAGG 858
Query 600 TTGAGTTACCACTGCGATCTGCTGACACGAGGCATGGGAGGTGTTGAGATGGAGTCAAGA 659
||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 859 TTGAGTTACCATTGTGATCTGCTTACACGAGGCATGGGAGGTGTAGAGATGGAGTCGAGA 918
Query 660 AAAGCAGAGGAATGGGCAAGCCAGTTGCAGTGCTGGTCTCTTCAGCTCATTAATTGTTTC 719
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct 919 AAAGCAGAGGAATGGGCGAGCCAGTTGCAGTGTTGGTCTCTTCAGCTCATAAACTGTTTC 978
Query 720 GCCTTTAAACCTGAGTTTCTTCCCACTCTGTGCAAACCCGAGTTTC-TGGTGAATCTTCC 778
|| |||||||| ||||||||||||||| |||| ||||| ||| ||| |||||||||||||
Sbjct 979 GCTTTTAAACCCGAGTTTCTTCCCACTTTGTGTAAACCTGAG-TTCTTGGTGAATCTTCC 1037
Query 779 GGTTATGTGGGGCGGACTTGTGAATGAGAACTCACCCGCTGGTATCGGTTTGCTTAGAAC 838
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1038 AGTTATGTGGGGAGGACTTGTGAATGAGAACTCGCCTGCTGGTATCGGTTTGCTTAGAAC 1097
Query 839 AATCTGTCAGCATAAACTAGGCCGTGGACCTGTTTCTGCGTGTGCAGGAATGATTGAGGC 898
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1098 AATCTGTCAGCATAAACTAGGTCGTGGACCTGTCTCTGCATGTGCAGGAATGATTGAGGC 1157
Query 899 CTTGTGTAATATCGCTCGGTCTTCTGATGATTGGCAGTATATGGCGATAGAATGTCTTCT 958
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1158 CTTGTGTAATATCGCTCGTTCTTCTGATGATTGGCAGTATATGGCGATTGAATGTCTTCT 1217
Query 959 TTGGTTGCTTCAAGATCCTAATACGTCTCACAAGGTAATTGATAAGGCGGTGCCAACGCT 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1218 TTGGTTGCTTCAAGATCCTAATACGTCTCACAAGGTGATTGATAAGGCGGTGCCAACGCT 1277
Query 1019 TGTGGATCTTGCAGAGATCACAAACTTGGGCGATCACAAGAAACTTGGAGATTCCATTGT 1078
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1278 TGTAGATCTTGCAGAGATCACAAACTTGGGTGATCACAAGAAACTTGGAGATTCCATTGT 1337
Query 1079 AAGTGTTCTTCAAGAATGCAGCTCCATGGGTAACCGTTCAAGGGAATTGATCGAAGAAAC 1138
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1338 GAGTGTTCTTCAAGAATGCAGCTCAATGGGTAACCGTTCAAGGGAATTGATCGAAGAAAC 1397
Query 1139 GGTAAATTCTCGACAAAGACTGAAATGGGAGAAGAGTATGCCTAAAGAGGATCTTCATAT 1198
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1398 GGTAAATTCTCGACAGAGACTGAAATGGGAGAAGAGTATGCCTAAAGAGGACCTTCATAT 1457
Query 1199 CAAACAAGCAGCAGCTTTAGTGGTCAAACTCGAAGGAAACTCTCTCTTTTCATCAGGAGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 CAAACAAGCAGCAGCTTTAGTGGTCAAACTCGAAGGAAACTCTCTCTTTTCATCAGGAGA 1517
Query 1259 TATCGCGGGTGCAGCGGAAAAGTACTCGGAAGCTTTGTCTCTATGTCCGATGAGGTCGAA 1318
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1518 TATCGCGGGTGCAGCGGAAAAGTACTCGGAAGCTTTGTCTCTATGCCCAATGAGGTCGAA 1577
Query 1319 GAAGGAAAGAGTAGTGTTGTATAGCAATCGAGCTCAGTGTCATCTCTTGCTGCAACAGCC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 GAAGGAAAGAGTAGTGTTGTATAGCAATCGAGCTCAGTGTCATCTCTTGCTACAACAGCC 1637
Query 1379 TTTGGTTGCTATAAGCGACGCCACACGTGCGCTCTGCTTGCACAGTCCTGTAAACCGGCA 1438
||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 1638 TTTGGTTGCTATAAGTGACGCTACACGTGCGCTTTGCTTGCACAATCCTGTAAACCGGCA 1697
Query 1439 TGCTAAGAGTCTTTGGAGAAGAGCTCAGGCCTATGATATGTTAGGTCTAGCTAAAGAGAG 1498
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1698 TGCTAAGAGTCTTTGGAGAAGAGCTCAGGCTTATGATATGTTAGGTCTAGCTAAAGAGAG 1757
Query 1499 TTTGTTAGATGCGATTCTGTTCATCAACGAATGTTCTCAGTCGAATGATCCGGATCTCTC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 TTTGTTAGATGCGATTCTGTTCATCAACGAATGTTCTCAGTCGAATGATCCGGATCTCTC 1817
Query 1559 CATGAGACAGAACAAGGTTCCTGATTACGCAGAGAGGTTGGTGAAGAAGCAGATGCGAGC 1618
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1818 CATGAGACAGAACAAGGTTCCTGATTACGCAGAGAGGTTGGTGAAGAAACAGATGCGTGC 1877
Query 1619 AGCTTGGTTGTTTAAAGAAGCAGCATTGAAGCATGGAGGTGTGCATAGGAAAGGTGAAGA 1678
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1878 AGCTTGGTTGTTTAAAGAAGCGGCATTGAAGCATGGAGGTGTGCATAGGAAAGGTGAAGA 1937
Query 1679 GAGGGAAGTGTATGGAAATGAAACCGATGATTCGGAATGGGAAACAGCGAGTGAGAGCGA 1738
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1938 GAGGGAAGTGTATGGAAATGAAACAGATGATTCGGAATGGGAAACAGCGAGTGAGAGTGA 1997
Query 1739 TATTGGAGATGATGGAAGAGACCATATGGGACTTGATGATGAGGAGGAGGAGGA--A-GA 1795
||| |||||||||||||| || |||||||||||||||||||||||||||||||| | ||
Sbjct 1998 TATAGGAGATGATGGAAGGGATCATATGGGACTTGATGATGAGGAGGAGGAGGAGGAAGA 2057
Query 1796 TGAAGGCCATGGTGAGAAGTGGAAGAACCGGGATAAATTGAGTGAGAAAAATGAGAAAAC 1855
|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2058 TGAAGGTCACGGTGAGAAGTGGAAGAACCGGGATAAATCGAGTGAGAAAAATGAGAAAAC 2117
Query 1856 TTCTGCGAAAGGTATGAGGCATGGATACAGTATAAAGCTAGCAGAAGATGAAATATGAAA 1915
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2118 TTCTGCCAAAGGTATGAGGCATGGATACAGCATAAAGCTTGCAGAAGATGAAATATGAAA 2177
Query 1916 CCCTGAAACACAATAAG 1932
|| |||||||||| |||
Sbjct 2178 CCTTGAAACACAACAAG 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5