BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940491
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10210.1 | Symbols: | CONTAINS InterPro DOMAIN/s: C2 calciu... 854 0.0
> AT5G10210.1 | Symbols: | CONTAINS InterPro DOMAIN/s: C2 calcium-dependent
membrane targeting (InterPro:IPR000008); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65030.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:3206140-3207136 FORWARD LENGTH=997
Length=997
Score = 854 bits (462), Expect = 0.0
Identities = 583/639 (91%), Gaps = 18/639 (3%)
Strand=Plus/Plus
Query 6 ATTCGAAATTTTCAAGCAAATGGGTATCGTTGAAAACATACGTTCTCTTAAACTTGAAGT 65
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 78 ATTCGAAATTTTCAAGCAAATGGGTATCGTTGAAAACATTCGTTCCCTTAAATTTGAAGT 137
Query 66 GAAAATCGTGGAAGCTAGAAACGTAGAGGTCAAGTCATCACTAACCACTCTCTTCGTTAG 125
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 138 GAAAATCGTGGAAGCTAGAAACGTAGAGCTCAAGTCATCGCCAACCACTCTCTTCGTTAG 197
Query 126 GTTCTATCTCCATGCAGGAAATAACAGTAAGATCGAACTAAACACTGCC-GAGATCCGTT 184
|||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 198 GTTCTATCTCCATGCAGGGAATAACAGTAAGATTGAACTAAACACT-CCAGAGATCCGTT 256
Query 185 CGAGATCAGACAAAGAGGTCGTGAT-CTGGAACCAATCATTCGGTCTGGAGTGCCAAGGG 243
||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 257 CGAGATCAGACTGTGAGGTCAT-TTCCTGGAACCAATCATTCGGTCTGGAGTGCCAAGGG 315
Query 244 AACGAAACGGTGGTCGAGGAATTGAAGCAACAAAGCGTTGTTTTCGAACTACGGAGAA-G 302
|||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 316 AACGAAACCGCGGTCGAGGAATTGAAGCAACAAAGTGTTGTTTTCGAACTACGGAGAAGG 375
Query 303 AAACACGACGTCGTTTTTGAAGAAGTGGTCGAGATCAGAGTTGGTGGGTAGAGGAAATAT 362
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 376 AAA-ACGACGCCGTTTTTGAAGAAGTGGTCGAAATCAGAGTTGGTGGGTAGAGGAAAGAT 434
Query 363 TTCTTGGAAATCTATGATAGAGTCTGATGGAATGGAAATAGAGAGATTCGTAGTGATGGA 422
|| ||||||||| | |||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 435 TTTTTGGAAATCGGTTATAGAGACTGATGGGATGGAAATAGAGAGATTTGTAGTGATGGA 494
Query 423 TGAGACAAAAGATCGGGTTTTGGAAGATTGTGATAAG------CCTCTTTTGTTGAAGAT 476
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 495 TGAGACAAAAGATCACGTTCTGGAAGATTGTGATAAGCATAAACCTCTTTTGTTGAAGAT 554
Query 477 AGCTTTAAAAGTGCAAGCTTC-AAAACCGGTGAA-ATCTAAGAGTGTGGAAGATCTTTGT 534
||||||||||||||||||||| |||| | ||||| | ||||||| |||||||||||||||
Sbjct 555 AGCTTTAAAAGTGCAAGCTTCAAAAATC-GTGAACA-CTAAGAGAGTGGAAGATCTTTGT 612
Query 535 GAGTGTAGAGATTGTAAG-AGATGTAATTGCTTAGATTATGAAGCTTTTGTTGTAGCTTG 593
||||||| ||||||| || | |||||| ||| ||||||||||||||||||||||||||||
Sbjct 613 GAGTGTAAAGATTGT-AGAACATGTAACTGCGTAGATTATGAAGCTTTTGTTGTAGCTTG 671
Query 594 TGCGTTAGCTGGAATTTAGTTTGTAAGAGGAAAATTTAA 632
|||||||||||| ||||||||||||||| |||||||||
Sbjct 672 TGCGTTAGCTGGGATTTAGTTTGTAAGAATAAAATTTAA 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5