BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940494
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:32... 3033 0.0
AT5G65010.2 | Symbols: ASN2 | asparagine synthetase 2 | chr5:25... 1982 0.0
> AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212689-3216466
REVERSE LENGTH=2030
Length=2030
Score = 3033 bits (1642), Expect = 0.0
Identities = 1729/1772 (98%), Gaps = 2/1772 (0%)
Strand=Plus/Plus
Query 2 TCTCTTATTGCCGCCACCACCACCATGTGTGGGATTCTTGCTGTGTTAGGCTGCGTTGAT 61
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 25 TCTCTTATTGCCGCCACCACCACCATGTGTGGGATTCTCGCTGTGTTAGGCTGCGTCGAT 84
Query 62 AACTCTCAAGCTAAACGTTCCCGTATCATCGAACTCTCTCGCAGATTGAGGCATAGAGGT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 AACTCTCAAGCTAAACGTTCCCGTATCATCGAACTCTCTCGCAGATTGAGGCATAGAGGT 144
Query 122 CCTGACTGGAGTGGGCTACATTGTTTTGAGGATTGTTATTTGGCTCATGAGCGTTTGGCT 181
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 145 CCTGACTGGAGTGGTCTACATTGTTATGAGGATTGTTATTTGGCTCATGAGCGTTTGGCT 204
Query 182 ATCGTTGACCCCACTTCTGGAGATCAACCACTCTATAACGAAGATAAGACCATTGCTGTC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ATCGTTGACCCCACTTCTGGAGATCAACCACTCTATAACGAAGATAAGACCATTGCTGTC 264
Query 242 ACGGTCAATGGAGAGATATACAACCACAAGGCTTTGCGTGAAAATCTGAAGTCTCACCAG 301
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 265 ACGGTCAATGGAGAGATTTACAACCACAAGGCTTTGCGTGAAAATTTGAAGTCTCACCAA 324
Query 302 TTTCGTACTGGGAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAACATGGAGAGGAA 361
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 325 TTCCGTACTGGGAGTGATTGTGAAGTGATTGCCCATCTTTACGAAGAACATGGAGAGGAA 384
Query 362 TTTGTCGACATGTTGGACGGCATGTTTGCATTTGTCCTTCTTGATTCCCGAGACAAAAGT 421
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 385 TTTGTCGACATGTTGGATGGCATGTTTGCATTTGTGCTTCTTGATACCCGAGACAAAAGC 444
Query 422 TTTATTGCTGCAAGGGATGCCATTGGTATCACTCCACTCTACATTGGGTGGGGTCTCGAT 481
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 445 TTTATTGCTGCAAGGGATGCCATTGGTATCACTCCACTCTACATCGGGTGGGGTCTCGAT 504
Query 482 GGTTCTGTCTGGTTTGCTTCGGAGATGAAAGCACTTAGTGATGATTGTGAACAGTTTATG 541
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 505 GGTTCTGTTTGGTTTGCTTCCGAGATGAAAGCACTTAGTGATGATTGTGAGCAGTTTATG 564
Query 542 TGCTTCCCCCCAGGCCACATCTATTCAAGTAAACAAGGTGGGCTTAGGAGGTGGTACAAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGCTTCCCCCCAGGCCACATCTATTCAAGTAAACAAGGTGGGCTTAGGAGGTGGTACAAC 624
Query 602 CCCCCGTGGTTCTCTGA-GTTGGTTCCTTCAACCCCATATGATCCCCTATTGGTGCGCAA 660
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 625 CCCCCGTGGTTCTCTGAGGTT-GTTCCTTCAACCCCATATGATCCCCTAGTGGTGCGCAA 683
Query 661 TACTTTTGAGAAGGCTGTTATAAAACGACTAATGACTGATGTGCCTTTTGGTGTCCTCCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TACTTTTGAGAAGGCTGTTATAAAACGACTAATGACTGATGTGCCTTTTGGTGTCCTCCT 743
Query 721 ATCTGGAGGATTAGACTCATCCCTTGTTGCTTCAGTAGCGTTACGCCATCTGGAAAAATC 780
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 744 ATCTGGTGGATTAGATTCATCCCTTGTTGCTTCAGTAGCATTACGCCATCTGGAAAAATC 803
Query 781 AGAAGCTGCTTGTCAGTGGGGTTCAAAGTTGCACACATTTTGTATCGGTTTGAAGGGATC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGAAGCTGCTTGTCAGTGGGGTTCAAAGTTGCACACATTTTGTATCGGTTTGAAGGGATC 863
Query 841 CCCGGATCTGAAAGCTGGCAGAGAAGTCGCTGACTATTTAGGAACTCGCCACCATGAGTT 900
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 864 CCCGGATCTTAAAGCTGGCAGAGAAGTCGCTGACTATTTAGGAACTCGCCACCACGAGTT 923
Query 901 ACACTTTACAGTCCAGGACGGAATAGATGCCATAGAAGAAGTCATATACCATGTTGAGAC 960
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 924 ACACTTTACAGTTCAGGACGGAATAGATGCCATAGAAGAAGTCATCTACCATGTTGAGAC 983
Query 961 CTATGACGTAACTACTATAAGAGCCAGCACTCCAATGTTTCTAATGTCGAGAAAAATCAA 1020
|||||| || |||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct 984 CTATGATGTGACTACTATTAGAGCCAGCACTCCAATGTTTCTTATGTCGCGAAAAATCAA 1043
Query 1021 ATCGCTTGGTGTAAAGATGGTTCTTTCTGGGGAAGGCTCTGATGAAATTTTTGGAGGATA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 ATCGCTTGGTGTAAAGATGGTTCTTTCTGGGGAAGGCTCTGATGAAATTTTTGGAGGATA 1103
Query 1081 TTTGTACTTCCATAAAGCACCCAACAAGAAGGAATTTCACGAGGAAACATGTCGAAAGAT 1140
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1104 TTTGTACTTCCATAAAGCTCCCAACAAGAAGGAATTTCATGAGGAAACATGTCGAAAGAT 1163
Query 1141 CAAAGCTCTTCATCAATATGATTGCTTGAGAGCTAACAAATCAACTTCTGCATGGGGTGT 1200
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1164 CAAAGCTCTTCATCAATATGACTGCTTGAGGGCTAACAAATCAACTTCTGCATGGGGTGT 1223
Query 1201 TGAGGCCCGTGTACCTTTCCTGGATAAAGAATTTATTAATGTCGCAATGAGCATCGATCC 1260
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1224 TGAGGCTCGTGTACCTTTCCTCGATAAAGAATTTATAAATGTCGCAATGAGCATCGATCC 1283
Query 1261 AGAGTGGAAGATGATTAGGCCTGATTTGGGAAGGATCGAGAAATGGGTGTTACGCAATGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AGAGTGGAAGATGATTAGGCCTGATTTGGGAAGGATCGAGAAATGGGTGTTACGCAATGC 1343
Query 1321 CTTTGATGATGAGAAAAATCCTTACCTACCAAAGCACATTCTATATAGGCAGAAAGAACA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CTTTGATGATGAGAAAAATCCTTACCTACCAAAGCACATTCTATATAGGCAGAAAGAACA 1403
Query 1381 GTTCAGTGATGGAGTTGGATACAGCTGGATTGATGGTCTAAAAGAACATGCGAACAAACA 1440
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1404 GTTCAGTGATGGAGTTGGATACAGCTGGATTGATGGTCTAAAAGATCATGCAAACAAACA 1463
Query 1441 TGTCTCTGACACAATGCTGATGAACGCAAGCTTTGTCTTCCCTGATAACACACCTTTGAC 1500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TGTCTCTGAGACAATGCTGATGAACGCAAGCTTTGTCTTCCCTGATAACACACCTTTGAC 1523
Query 1501 AAAAGAAGCTTACTACTACAGAACCATCTTTGAAAAGTTCTTCCCTAAGAGTGCTGCTAG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AAAAGAAGCTTACTACTACAGAACCATCTTTGAAAAGTTCTTCCCTAAGAGTGCTGCTAG 1583
Query 1561 AGCAACTGTACCAGGAGGTCCAAGTGTGGCATGTAGTACAGCAAAAGCTGTGGAATGGGA 1620
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1584 AGCAACTGTACCAGGAGGTCCAAGTGTGGCATGTAGCACAGCAAAAGCTGTGGAATGGGA 1643
Query 1621 CGCAGCTTGGTCACAGAATCTTGACCCATCAGGTCGTGCGGCTCTTGGAGTTCATGTTTC 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 CGCAGCTTGGTCACAGAATCTTGACCCATCAGGTCGTGCGGCTCTTGGAGTTCATGTTTC 1703
Query 1681 AGCTTATGGGGAAGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AGCTTATGGGGAAGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGA 1763
Query 1741 GAAGACTCCAGCCATTGTTTGAGGATAAACAA 1772
||||||||||||||||||||||||||||||||
Sbjct 1764 GAAGACTCCAGCCATTGTTTGAGGATAAACAA 1795
> AT5G65010.2 | Symbols: ASN2 | asparagine synthetase 2 | chr5:25969190-25972575
FORWARD LENGTH=2071
Length=2071
Score = 1982 bits (1073), Expect = 0.0
Identities = 1490/1692 (88%), Gaps = 25/1692 (1%)
Strand=Plus/Plus
Query 22 CACCATGTGTGGGATTCTTGCTG-TGTTAGGCTGCGTTGATAACTCTCAAGCTAAACGTT 80
||| |||||||||||||| |||| | || || ||| | || |||||||||||||||||||
Sbjct 31 CACAATGTGTGGGATTCTCGCTGTTCTT-GGTTGCATCGACAACTCTCAAGCTAAACGTT 89
Query 81 CCCGTATCATCGAACTCTCTCGCAGATTGAGGCATAGAGGTCCTGACTGGAGTGGGCTAC 140
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 90 CTCGTATCATCGAACTCTCTCGCAGATTGAGGCACAGAGGTCCTGATTGGAGTGGACTCC 149
Query 141 ATTGTTTTGAGGATTGTTAT-TTGGCTCATGAGCGTTTGGCTATCGTTGACCCCACTTCT 199
|||||| ||| ||||||||| || || ||||||||||| || ||| ||||||| |||||
Sbjct 150 ATTGTTATGAAGATTGTTATCTT-GCCCATGAGCGTTTAGCCATCATTGACCCTACTTCA 208
Query 200 GGAGATCAACCACTCTATAACGAAGATAAGACCATTGCTGTCACGGTCAATGGAGAGATA 259
||||| ||||| |||||||||||||| |||||| | |||||||| || ||||||||||||
Sbjct 209 GGAGACCAACCTCTCTATAACGAAGACAAGACCGTCGCTGTCACTGTAAATGGAGAGATA 268
Query 260 TACAACCACAAGGCTTTGCGTGAAAATCTGAAGTCTCACCAGTTTCGTACTGGGAGTGAT 319
|||||||||||| |||||||||||| || |||||||| ||||| |||||||| |||||
Sbjct 269 TACAACCACAAGATTTTGCGTGAAAAGCTTAAGTCTCATCAGTTCCGTACTGGTAGTGAC 328
Query 320 TGTGAAGTGATTGCCCATCTTTATGAAGAACATGGAGAGGAATTTGTCGACATGTTGGAC 379
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 329 TGTGAAGTGATTGCACATCTTTACGAAGAACATGGAGAGGAATTTATCGACATGTTGGAT 388
Query 380 GGCATGTTTGCATTTGTCCTTCTTGATTCCCGAGACAAAAGTTTTATTGCTGCAAGGGAT 439
|| ||||| || ||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 389 GGAATGTTCGCGTTTGTCCTTCTTGATACTCGCGACAAAAGTTTTATTGCTGCAAGGGAC 448
Query 440 GCCATTGGTATCACTCCACTCTACATTGGGTGGGGTCTCGATGGTTCTGTCTGGTTTGCT 499
|| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 449 GCTATTGGTATCACTCCACTTTACATTGGATGGGGTCTTGATGGTTCTGTCTGGTTTGCT 508
Query 500 TCGGAGATGAAAGCACTTAGTGATGATTGTGAACAGTTTATGTGCTTCCCC-CCAGGCCA 558
|||||||||||||| |||||||||||||||||||||||||||| ||| || || |||||
Sbjct 509 TCGGAGATGAAAGCGCTTAGTGATGATTGTGAACAGTTTATGT-CTTTTCCTCCTGGCCA 567
Query 559 CATCTATTCAAGTAAACAAGGTGGGCTTAGGAGGTGGTACAACCCCCCGTGGTTCTCTGA 618
|||||| |||||||||||||| |||||||||||||||||||| || ||||||| | |||
Sbjct 568 CATCTACTCAAGTAAACAAGGAGGGCTTAGGAGGTGGTACAATCCTCCGTGGTACAATGA 627
Query 619 GTTGGTTCCTTCAACCCCATATGATCCCCTA-TTGGTGCGCAATACTTTTGAGAAGGCTG 677
| |||||||||||||||||||||||| || || |||||||| |||| ||||||||||
Sbjct 628 GCAGGTTCCTTCAACCCCATATGATCCTTTAGTTC-TGCGCAATGCTTTCGAGAAGGCTG 686
Query 678 TTATAAA-ACGACTAATGACTGATGTGCCTTTTGGTGTCCTCCTATCTGGAGGATTAGAC 736
| ||||| | |||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 687 TAATAAAGA-GACTTATGACTGATGTGCCTTTTGGAGTTCTCCTATCTGGAGGATTGGAC 745
Query 737 TCATCCCTTGTTGCTTCAGTAGCGTTACGCCATCTGGAAAAATCAGAAGCTGCTTGTCAG 796
|| || || |||||| ||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 746 TCGTCTCTCGTTGCTGCAGTAGCATTACGCCATTTGGAAAAATCAGAAGCTGCTCGTCAA 805
Query 797 TGGGGTTCA-AAGTTGCACACATTTTGTATCGGTTTGAAGGGATCCCCGGATCTGAAAGC 855
||||||||| || |||||||| ||||| ||||||||| ||||||| || ||||| |||||
Sbjct 806 TGGGGTTCACAA-TTGCACACGTTTTGCATCGGTTTGCAGGGATCGCCAGATCTTAAAGC 864
Query 856 TGGCAGAGAAGTCGCTGACTAT-TTAGGAACTCGCCACCATGAGTTACACTTTACAGTCC 914
|||||||||||| ||||||||| || ||||| |||||||| ||||| || |||||||| |
Sbjct 865 TGGCAGAGAAGTTGCTGACTATCTT-GGAACACGCCACCACGAGTTTCAGTTTACAGTTC 923
Query 915 AGGACGGAATAGATGCCATAGAAGAAGTCATATACCATGTTGAGACCTATGACGTAACTA 974
||||||| ||||| || ||||| |||||||| |||||| ||||||| |||||||| ||||
Sbjct 924 AGGACGGGATAGACGCGATAGAGGAAGTCATTTACCATATTGAGACTTATGACGTTACTA 983
Query 975 CTATAAGAGCCAGCACTCCAATGTTTCTAATGTCGAGAAAAATCAAATCGCTT-GGTGTA 1033
| |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || ||||||
Sbjct 984 CAATAAGAGCTAGCACCCCAATGTTTCTTATGTCCAGAAAAATTAAATCT-TTAGGTGTA 1042
Query 1034 AAGATGGTTCTTTCTGGGGAAGGCTCTGATGAAATTTTTGGAGGATATTTGTACTTCCAT 1093
||||||||||||||||||||||| ||||||||||| | || ||||| ||||||||||||
Sbjct 1043 AAGATGGTTCTTTCTGGGGAAGGTTCTGATGAAATACTGGGGGGATACTTGTACTTCCAT 1102
Query 1094 AAAGCACCCAACAAGAAGGAATTTCACGAGGAAACATGTCGAAAGATCAAAGCTCTTCAT 1153
|| || ||||||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct 1103 AAGGCTCCCAACAAGAAAGAATTTCATGAAGAAACATGCCGAAAGATCAAAGCTCTCCAC 1162
Query 1154 CAATATGATTGCTTGAGAGCTAACAAATCAACTTCTGCATGGGGTGTTGAGGCCCGTGTA 1213
|||| |||||| |||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1163 CAATTTGATTGTTTGAGAGCTAACAAATCAACTTCTGCGTGGGGTGTCGAAGCTCGTGTG 1222
Query 1214 CCTTTCCTGGATAAAGAATTTATTAA-TGTCGCAATGAGCATCGATCCAGAGTGGAAGAT 1272
|||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||| |
Sbjct 1223 CCTTTCCTAGATAAAGAATTT-TTAAATGTTGCAATGAGCATCGATCCAGAGTGGAAGTT 1281
Query 1273 GATTAGGCCTGATTTGGGAAGGATCGAGAAATGGGTGTTACGCAATGCCTTTGATGATGA 1332
||| | ||||||| | |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1282 GATCAAGCCTGATCTCGGAAGGATCGAGAAGTGGGTGCTACGCAATGCCTTTGATGATGA 1341
Query 1333 -GAAAAATCCTTACCTACCAAAGCACATTCTATATAGGCAGAAAGAACAGTTCAGTGATG 1391
||| | ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1342 AGAACGA-CCTTATCTACCAAAGCACATTCTATATAGACAGAAAGAACAGTTTAGTGATG 1400
Query 1392 GAGTTGGATACAGCTGGATTGATGGTCTAAAAGAACATGCGAACAAACATGTCTCTGACA 1451
||||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||| |
Sbjct 1401 GAGTTGGGTATAGCTGGATAGATGGTCTGAAAGATCATGCAAATAAACATGTCTCTGATA 1460
Query 1452 CAATGCTGATGAA-CGCAAGCTTTGTCTTCCCTGATAACACACCTTTGACAAAAGAAGCT 1510
| |||||| | || |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1461 CTATGCTG-TCAAACGCAAGCTTTGTCTTCCCGGATAACACACCTCTGACAAAAGAAGCG 1519
Query 1511 TACTACTACAGAACCATCTTTGAAAAGTTCTTCCCTAAG-AG--TGCTGCTAGAGCAACT 1567
|||||||||||||||||||| || ||||||||||| ||| || |||||||||||| |||
Sbjct 1520 TACTACTACAGAACCATCTTCGAGAAGTTCTTCCCGAAGCAGAGTGCTGCTAGAGCGACT 1579
Query 1568 GTACCAGGAGGTCCAAGTGTGGCATGTAGTACAGCAAAAGCTGTGGAATGGGACGCAGCT 1627
|||||||||||||||||| | || || ||||| || |||||||| |||||||| ||| ||
Sbjct 1580 GTACCAGGAGGTCCAAGTATAGCTTGCAGTACCGCGAAAGCTGTAGAATGGGATGCAACT 1639
Query 1628 TGGTCACAGAATCTTGACCCATCAGGTCGTGCGGCTCTTGGAGTTCATGTTTCAGCTTAT 1687
|||||| |||||||||| || ||||| |||||||||||||||||||||||| ||||||||
Sbjct 1640 TGGTCAAAGAATCTTGATCCGTCAGGCCGTGCGGCTCTTGGAGTTCATGTTGCAGCTTAT 1699
Query 1688 GGGGAAGATAAA 1699
| || ||||||
Sbjct 1700 GAAGAGGATAAA 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5