BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940507
Length=452
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:32... 651 0.0
AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:32... 468 2e-131
AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:29... 435 2e-121
AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:34... 351 2e-96
AT5G12910.1 | Symbols: | Histone superfamily protein | chr5:40... 137 7e-32
> AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:3268847-3269550
REVERSE LENGTH=704
Length=704
Score = 651 bits (352), Expect = 0.0
Identities = 410/438 (94%), Gaps = 3/438 (1%)
Strand=Plus/Plus
Query 3 TTGTTTGATTTCTTCGAGATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGC 62
|||||||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 61 TTGTTTGA--T-TTCGAAATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGC 117
Query 63 AAAGCACCGAGGAAGCAGCTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGA 122
|||||||| || ||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 118 AAAGCACCAAGAAAGCAACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGA 177
Query 123 GGAGTGAAGAAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGAGTGAAGAAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAG 237
Query 183 TACCAGAAGAGCACAGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAG 242
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TATCAGAAGAGCACTGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAG 297
Query 243 ATTGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTTTACAA 302
|| ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||
Sbjct 298 ATAGCTCAGGATTTCAAGACGGATCTGAGGTTTCAGAGCAGTGCTGTTGCTGCTTTACAA 357
Query 303 GAGGCGGCTGAGGCTTACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCAC 362
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 358 GAGGCTGCTGAGGCTTACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCAC 417
Query 363 GCCAAGAGGGTCACTATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAA 422
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 418 GCTAAGAGGGTCACCATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAA 477
Query 423 AGAGCTTGAAGACTTTTG 440
|||||||||||||| |||
Sbjct 478 AGAGCTTGAAGACTGTTG 495
> AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:3270289-3270952
REVERSE LENGTH=664
Length=664
Score = 468 bits (253), Expect = 2e-131
Identities = 364/417 (87%), Gaps = 9/417 (2%)
Strand=Plus/Plus
Query 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAA-GCACCGAGGAAGCA 79
|||||||||||||||||||| ||| | |||||||||||||| ||| ||||| ||||||||
Sbjct 65 ATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGG-AAAGGCACCAAGGAAGCA 123
Query 80 GCTGGC-AACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGC 138
|| || | |||| || ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 124 ACTCGCGACCAAA-GCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCAC 182
Query 139 ATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAG 198
| ||||||||||||||||| || || |||||||| ||||||||||| |||||||| || |
Sbjct 183 ACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACTG 242
Query 199 AGCTTCTGATCCGTAAGCTTCCTTTCCAGCG-TCTGGTTCGTGAGATTGCTCAGGATTTC 257
||||| |||||||||||||||| |||||| | | ||||||||||||||||||| ||||||
Sbjct 243 AGCTTTTGATCCGTAAGCTTCCGTTCCAGAGAT-TGGTTCGTGAGATTGCTCAAGATTTC 301
Query 258 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGC 316
||||||||||||||||||||||||||||||||||||||| || || || || ||||||||
Sbjct 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTT-CAGGAAGCAGCTGAGGC 360
Query 317 TTACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGGTCAC 376
||| |||||||| | |||||||| ||||| || || |||||||| || |||||||| ||
Sbjct 361 TTATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTAC 420
Query 377 TATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAAAGAGCTTGAAG 433
|| |||||||||||||||||||| || ||||| ||||||||||| || |||| |||
Sbjct 421 GATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTT-AAG 476
> AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:2971593-2972199
REVERSE LENGTH=607
Length=607
Score = 435 bits (235), Expect = 2e-121
Identities = 354/412 (86%), Gaps = 6/412 (1%)
Strand=Plus/Plus
Query 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAA-GCACCGAGGAAGCA 79
||||||||||||||||| || ||||||||||| |||||||| ||| || || ||||||||
Sbjct 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGAAGCA 126
Query 80 GCTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCA 139
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 127 GCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACA 186
Query 140 TAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAGA 199
|||||| | || ||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 187 CAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 246
Query 200 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTC-GTGAGATTGCTCAGGATTTCA 258
|||||| |||||||| || ||||||||| | || || | | ||||| |||||||| ||||
Sbjct 247 GCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGT-CAGAGAGATCGCTCAGGACTTCA 305
Query 259 AGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGCT 317
| || ||||| | |||||||||||||||||||| ||| || || || || ||||| |||
Sbjct 306 AAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTT-CAGGAAGCTGCTGAAGCT 364
Query 318 TACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGGTCACT 377
||||| || || | || |||||||| || || ||||| ||||||||||||||||||||
Sbjct 365 TACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACG 424
Query 378 ATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAAAGAGCTT 429
|||||||| ||||| ||||||||||| || || |||||||||||| ||||||
Sbjct 425 ATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTT 476
> AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:3472405-3473466
REVERSE LENGTH=714
Length=714
Score = 351 bits (190), Expect = 2e-96
Identities = 352/428 (82%), Gaps = 20/428 (5%)
Strand=Plus/Plus
Query 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAAGCACCGAGGAAGCAG 80
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 118 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAG 177
Query 81 CTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCAT 140
|| || || ||||||||||||||||| || || ||||||||||||| |||||||| ||
Sbjct 178 CTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCAC 237
Query 141 AGATT-CCGTCCAGGAACTGTTGC-CTTGAGAGAGAT-CAGGAAGTACCAGAAGAGCACA 197
| || |||||||||||| || || ||| | ||||| | | |||||||||||||| ||
Sbjct 238 CG-TTACCGTCCAGGAACCGTCGCTCTTC-GTGAGATTC-GTAAGTACCAGAAGAGTACT 294
Query 198 GAGCTTCT-GATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATTGCTCAGGATTT 256
|| || | |||||| |||||||| ||||||||||| ||||| || || |||||||| ||
Sbjct 295 GAA-TTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTT 353
Query 257 CAAGACGGATCTGAGGTTCCAGAG-CAGTGCCGTCGC-AGCT-TTACAAGAGGCGGCTGA 313
|||||||||||||||||| ||||| || || || | |||| || ||||||||||||||
Sbjct 354 CAAGACGGATCTGAGGTTTCAGAGTCAC-GCGGT-GTTAGCTCTT-CAAGAGGCGGCTGA 410
Query 314 GGCTTACCTTGTTGGTTTGTTT-GAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGG 372
||| ||||| ||||| | ||| || || ||||| || ||||| ||||||||||||||||
Sbjct 411 GGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGG 469
Query 373 TCACTATCATGCCTAAGGATATCCAGCTCGCAAGGAGGAT-CAGAGGAGAAAGAGCTTGA 431
| || |||||||||||||| || || | || || || || | | |||||| | |||| |
Sbjct 470 TTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTC-GTGGAGAACGTGCTT-A 527
Query 432 AGACTTTT 439
|| |||||
Sbjct 528 AG-CTTTT 534
> AT5G12910.1 | Symbols: | Histone superfamily protein | chr5:4077162-4077557
FORWARD LENGTH=396
Length=396
Score = 137 bits (74), Expect = 7e-32
Identities = 200/260 (77%), Gaps = 12/260 (5%)
Strand=Plus/Plus
Query 150 CCAGGAACTGTTGC-CTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAGAGCTT-CTGA 207
|||||||| || || | | || |||||||||||||||||||||| |||||| ||| | |
Sbjct 115 CCAGGAACAGTGGCAC-TCAGGGAGATCAGGAAGTACCAGAAGACCACAGA-CTTAGTTA 172
Query 208 TCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATTGCTCAGGA-TTTCAAGACGGAT 266
| | || || |||||||| | ||||| ||||| ||||| || | ||||| | |||
Sbjct 173 TAAGAAAACTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTCA-GAGTCTCAAGGCAGAT 231
Query 267 CTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGCTTACCTTGT 325
|| |||||||||| | |||| || | ||| || ||||| || ||||| |||| | ||
Sbjct 232 CTAAGGTTCCAGACCGGTGCTGTTTCCGCTCTT-CAAGAAGCCGCTGAAGCTTTTATGGT 290
Query 326 TGGTTTGTTTGAAGACACTAACCTT-TGCGCGATTCACGCCAAGAGGGTC-ACTATCATG 383
||| ||||||| ||||| || || || || || || ||||| | | || |||||||||
Sbjct 291 TGGAATGTTTGAGGACACCAA-TTTGTGTGCCATGCATGCCAA-AAGATCAACTATCATG 348
Query 384 CCTAAGGATATCCAGCTCGC 403
||||||||||||||||||||
Sbjct 349 CCTAAGGATATCCAGCTCGC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21514596572
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5