BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940511
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10420.1 | Symbols: | MATE efflux family protein | chr5:327... 597 5e-170
AT5G10430.1 | Symbols: AGP4, ATAGP4 | arabinogalactan protein 4... 226 3e-58
> AT5G10420.1 | Symbols: | MATE efflux family protein | chr5:3273553-3276490
REVERSE LENGTH=1495
Length=1495
Score = 597 bits (323), Expect = 5e-170
Identities = 366/387 (95%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 207 TCAGCTGGGGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTGTATGGTTAT 266
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 580 TCAGCTGGAGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTCTATGGTTAT 639
Query 267 AAACTCGGAATCATAGGGACCATAGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 326
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 640 AAACTCGGAATCATAGGGACTATGGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 699
Query 327 ATCTTGTTTATGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCACC 386
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 700 ATCTTATTTTTGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCTCA 759
Query 387 GAAGCTTTCACCGGACTTTTAGAATTCACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 446
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 760 GAAGCTTTCACCGGACTTTTAGAATTAACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 819
Query 447 TGTTTAGAGAATTGGTACTATAAAATACTAAT-CTTGATGACCGGAAACCTAGTAAATGC 505
|| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 820 TGCTTAGAGAATTGGTACTATAAAATACTAATGCT-GATGACCGGGAACCTAGTAAATGC 878
Query 506 GAAAGTTGCGGTGGACTCCTTATCTATATGCATGTCCGTAAATGGTTGGGAGATGATGAT 565
|||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 879 GAAAATTGCTGTGGACTCCTTATCAATATGCATGTCGGTAAATGGTTGGGAGATGATGAT 938
Query 566 CCCACTTGCTTTATTTGCGGGAACCGG 592
|||||||| || || |||||||||||
Sbjct 939 TCCACTTGCCTTCTTCGCGGGAACCGG 965
> AT5G10430.1 | Symbols: AGP4, ATAGP4 | arabinogalactan protein
4 | chr5:3277532-3278313 REVERSE LENGTH=782
Length=782
Score = 226 bits (122), Expect = 3e-58
Identities = 151/165 (92%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 4 TGCTCCTTCTCCGGCTGATGTTCCCGCTGCATCTCCACCAGCACCAGAAGGTCCCACCGC 63
|||||||||||| |||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 303 TGCTCCTTCTCCTGCTGATGTTCCCACCGCCTCTCCACCAGCACCGGAAGGTCCCACCG- 361
Query 64 T-AGCCCAAGCGGTGCTCCAGGACCTTCAGATGCCGCCGCTGCCCCAAGCGCCGCTTTCT 122
| ||||||||| ||||||| |||||||||||||| || |||||||||||||||| ||||
Sbjct 362 TGAGCCCAAGCAGTGCTCCCGGACCTTCAGATGCATCCCCTGCCCCAAGCGCCGCATTCT 421
Query 123 CCAACAAGGCTTTCTTCGCCGGAACCGCATTCGCCGCTATTATGT 167
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 CCAACAAGGCTTTCTTCGCCGGAACCGCCTTCGCCGCTATTATGT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5