BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940513
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:... 1275 0.0
AT5G65430.3 | Symbols: GRF8 | general regulatory factor 8 | chr... 828 0.0
> AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:3283853-3286347
REVERSE LENGTH=1531
Length=1531
Score = 1275 bits (690), Expect = 0.0
Identities = 728/746 (98%), Gaps = 3/746 (0%)
Strand=Plus/Plus
Query 2 tctctcttctctctctctAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGC 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TCTCTCTT-TCTCTCTCTAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGC 127
Query 62 GAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGT 187
Query 122 TACAGGCGCTACTCCGGCGGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGC 181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TACAGGCGCTACTCCAGCGGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGC 247
Query 182 TTACAAAAACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCCTCTATTGAGCA 241
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 248 TTACAAAAACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCTTCGATTGAGCA 307
Query 242 GAAGGAAGAGAGTCGTAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAA 301
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAAGGAAGAGAGTAGGAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAA 367
Query 302 AGTTGAGACTGAGCTTTCTTCAGTTTGCTCTGGAATTCTTAAGCTCCTTGACTCGCATCT 361
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 368 AGTTGAGTCTGAGCTTTCTTCTGTTTGCTCTGGAATCCTTAAGCTCCTTGACTCGCATCT 427
Query 362 GATCCCATCTGCTGGAGCTAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTA 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GATCCCATCTGCTGGAGCGAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTA 487
Query 422 TCATCGTTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATAC 481
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCATCGGTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATAC 547
Query 482 CATGCTCGCTTACAAAGCTGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCC 541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CATGCTCGCTTACAAAGCAGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCC 607
Query 542 AATAAGGCTTGGTCTGGCCCTGAATTTCTCAGTCTTCTACTATGAGATTCTCAATTCTTC 601
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 GATAAGGCTTGGTCTGGCCCTGAATTTCTCAGTGTTCTACTATGAGATTCTCAATTCTTC 667
Query 602 AGACAAAGCTTGTAACATGGCCAAACAGGCTTTTGAAGAAGCCATAGCTGAGCTTGACAC 661
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 668 AGACAAAGCTTGTAACATGGCCAAACAGGCTTTTGAGGAGGCCATAGCTGAGCTTGACAC 727
Query 662 AT-TGGGAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATT 720
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 -TCTGGGAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATT 786
Query 721 TAACCCTTTGGACCTCCGATATGCAG 746
||||||||||||||||||||||||||
Sbjct 787 TAACCCTTTGGACCTCCGATATGCAG 812
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 744 CAGGAGCAGATGGACGAGGCCTGAGGATCTAGAGGAAGGGGGG 786
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 909 CAGGAGCAGATGGACGAGGCCTGAGGATCTAGATGAAGGGGGG 951
> AT5G65430.3 | Symbols: GRF8 | general regulatory factor 8 | chr5:26148382-26150476
REVERSE LENGTH=1252
Length=1252
Score = 828 bits (448), Expect = 0.0
Identities = 644/740 (87%), Gaps = 7/740 (1%)
Strand=Plus/Plus
Query 11 tctctctctAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGCGAAGCTCGC 70
||| |||||||||||| |||| ||| ||||||| || ||||| |||||||||||||||||
Sbjct 213 TCT-TCTCTAATGGCGACGACCTTAAGCAGAGATCAATATGTCTACATGGCGAAGCTCGC 271
Query 71 CGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTTACAGGCGC 130
|||||| || ||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 272 CGAGCAAGCCGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTAAGTGGAGC 331
Query 131 TACTCCGGC-GGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGCTTACAAAA 189
||| ||||| || ||||| ||||| |||||||||||||| ||||| || || || || |
Sbjct 332 TACACCGGCCGGT-GAGCTGACCGTAGAAGAGAGGAATCTTCTCTCGGTCGCGTATAAGA 390
Query 190 ACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCCTCTATTGAGCAGAAGGAAG 249
||||||| |||||||| || || || ||||| |||||||| || |||||||| |||||||
Sbjct 391 ACGTGATTGGATCTCTTCGTGCGGCATGGAGAATCGTGTCTTCGATTGAGCAAAAGGAAG 450
Query 250 AGAGTC-GTAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAAAGTTGAG 308
|||| | | |||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 451 AGAG-CAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATCTAAAGTTGAG 509
Query 309 ACTGAGCTTTCTTCAGTT-TGCTCTGGAATTCTTAAGCTCCTTGACTCGCATCTGATCCC 367
|||||||||||||| | | || ||||| ||||| | | | ||||| |||||||| || ||
Sbjct 510 ACTGAGCTTTCTTC-GATCTGTTCTGGGATTCTCAGGTTACTTGATTCGCATCTAATTCC 568
Query 368 ATCTGCTGGAGCTAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTATCATCG 427
|| ||| || |||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 569 TTCAGCTACTGCCAGTGAGTCTAAGGTTTTTTACCTGAAGATGAAAGGAGATTATCATCG 628
Query 428 TTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACCATGCT 487
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 629 TTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACTATGAT 688
Query 488 CGCTTACAAAGCTGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCCAATAAG 547
||||||||||||||||||||| | |||| ||| ||| | |||||||| ||||| || ||
Sbjct 689 CGCTTACAAAGCTGCTCAGGACGTTGCAGTTGCTGATCTAGCACCTACACATCCGATCAG 748
Query 548 GCTTGGTCTGGCCCTGAATTTCTCAGTCTTCTACTATGAGATTCTCAATTCTTCAGACAA 607
||||||| |||| || || |||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 749 GCTTGGTTTGGCTCTTAACTTCTCAGTGTTTTACTACGAGATTCTCAACTCTTCAGAGAA 808
Query 608 AGCTTGTAACATGGCCAAACAGGCTTTTGAAGAAGCCATAGCTGAGCTTGACACATTGGG 667
|||||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 809 AGCTTGTAGCATGGCGAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGACACATTGGG 868
Query 668 AGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATTTAACCCT 727
|||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| |||||||
Sbjct 869 AGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTAAGGGACAATCTAACCCT 928
Query 728 TTGGACCTCCGATATGCAGG 747
||||||||||||||||||||
Sbjct 929 TTGGACCTCCGATATGCAGG 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5