BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940514
Length=3027
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65440.3 | Symbols: | unknown protein; INVOLVED IN: biologi... 1463 0.0
> AT5G65440.3 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G24610.1). | chr5:26151421-26157066
FORWARD LENGTH=3832
Length=3832
Score = 1463 bits (792), Expect = 0.0
Identities = 1596/1975 (81%), Gaps = 92/1975 (5%)
Strand=Plus/Plus
Query 1085 CAATATATCATGAACCAGAGCATGACCGT-ATTGGGAGAATCCAACTT-CATATAAACTA 1142
||||||||||||||||||||||||| | | |||||||||||||||||| | | | | ||
Sbjct 1693 CAATATATCATGAACCAGAGCATGAAC-TAATTGGGAGAATCCAACTTACGT-TTAGTTA 1750
Query 1143 CTCAAGCAGCTTAGATGAAAAAACTAAGTGTGGGTTGGTTGCAGAAACTTCAGCTTATGA 1202
|||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1751 CTCAAGTAGTTTAGATGAAAAAACTAAGTGTGGGTTGGTGGCAGAAACTTCAGCGTATGA 1810
Query 1203 -CTTGGTTTTGGAAGTGGCTATGAAAGCTGAGCAATTTCAGCGCCA-AAATCTGTTAATT 1260
||| || | || |||||||||||||| || | ||||||||| | |||| | || |||
Sbjct 1811 TCTT-GTCCTAGAGGTGGCTATGAAAGCAGAACGATTTCAGCG-TAGAAATTTATT-ATT 1867
Query 1261 AAAGGG-CCATGGCACTGGATGGTAACTCGATTTGCATCCTATTACGGAATTTCGGATGC 1319
||||| || ||||| |||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 1868 TAAGGGCCCGTGGCATTGGATGATAACTCGATTTGCATCCTATTACGGGGTTTCAGATGC 1927
Query 1320 ATATACAAAATTAAGATATCTTTCATATGTCATGGATGTTGCCTCGCCTACTAAGGACTG 1379
||| || | ||||||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1928 ATACACTAGATTAAGATATCTTTCTTATGTCATGGATGTCGCATCGCCTACCAAGGACTG 1987
Query 1380 TCTTGATCTGATATATGATTTTCT-GTCGCCTGTTTTAATGA-AAGGCAATCACAAGGCT 1437
||||||||||||| |||||||||| || ||| || |||||| || |||| |||| ||||
Sbjct 1988 TCTTGATCTGATACATGATTTTCTATTC-CCTATTATAATGACAA-GCAACCACAGGGCT 2045
Query 1438 GTATTGAGTCATCAAGAGAATCGCTTGCTTGGGGAGATTGATGAACAAGTTCAGCAGATT 1497
||||||||||||||||||||||| || |||||||| ||||| |||||| |||||||||||
Sbjct 2046 GTATTGAGTCATCAAGAGAATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATT 2105
Query 1498 CTTGC-TCTGACATTCGAGAATTATAAATCTCTTGATGAATCT-TCTTTATCTGGAATCA 1555
|| || || | |||| |||||||||||||| |||| |||| || ||||| || || || |
Sbjct 2106 CTCGCTTCAG-CATTTGAGAATTATAAATCACTTGCTGAA-CTGTCTTTCTCCGGGATGA 2163
Query 1556 AAGATGTTTTTGAGCCTCCTACAGGAATTCCAGCGCCTGCTATAGCGCCAGCTATCAAGC 1615
|||||||||||||| || |||| || | |||||| |||||||||| ||||| ||||||
Sbjct 2164 AAGATGTTTTTGAGTCTGCTACGGGGACTCCAGCACCTGCTATAGAATCAGCTGTCAAGC 2223
Query 1616 TTTATGGTCTTCTCAATGACGTGTTAAGCCCTGAGGCACAACT-AAGACTTTTCAGATAC 1674
|||||||||||||||| || || |||| ||| |||||||| | || ||| | |||||||
Sbjct 2224 TTTATGGTCTTCTCAACGATGTATTAACCCCCGAGGCACAGTTGAA-ACTCTGCAGATAC 2282
Query 1675 TTTCAGACTGCTTCAAAGAAGAGGTCAAGAAGATACTTATTGGAAACGAACAATATACTT 1734
|||||| |||||||||||||||||||||||||| | |||||||| || ||| || |||||
Sbjct 2283 TTTCAGGCTGCTTCAAAGAAGAGGTCAAGAAGACATTTATTGGACACAAACGATTTACTT 2342
Query 1735 CACAATC--A-T--A-TTG-AGCA--TG--CACA---AG---GCA-CTTCTTATCAGAGG 1776
|||| | | | | || | || || | || | ||| |||| ||||| | |
Sbjct 2343 AACAACCGTAGTGAAGGTGTACCAGTTGATCCCATGGTGCTTGCAGCTTCGTATCAAAAG 2402
Query 1777 ATGAAGTCTTTAATTTTGAGCCTTAAGAGTGAAATCTCAACTGATATAGCCATCCGTAAC 1836
||||||||| |||| || |||||||| | |||||| || ||||| ||||| || | | ||
Sbjct 2403 ATGAAGTCTCTAATCTTAAGCCTTAAAAATGAAATATCCACTGACATAGCGATTCATGAC 2462
Query 1837 TACAATGTGCTCCCAAGCTTTATAGACCTTCCAAAACTTTCGGCGGCAATATATAGTGTG 1896
| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 2463 TGCAATGTGCTCCCAAGCTTTATAGACCTTCCAAATCATTCAGCGGCAATATATAGTGTT 2522
Query 1897 GATCTATTCAACAGACTAAGGGAATATCTTATTGCATGGCCCCCTCCTTCTGCAACGCCT 1956
||| | | ||| || || |||||| |||| | | ||||| |||||| || | |||
Sbjct 2523 GATGTCTGCAATAGGCTCCGGGAATTTCTTCTCGTTTGGCCTCCTCCTGGACCATCACCT 2582
Query 1957 CCAGTTGTCGAGCTTA-TCATTACGACAGCTGACTTTGA-AGCCGATCTCTCTCGCTGGA 2014
| ||||| || ||| | ||||| || ||||||||| | || ||||||||| |||||
Sbjct 2583 GCGGTTGTTGAT-TTAGTTATTACAACTGCTGACTTTCAGAGA-GATCTCTCTAGCTGGC 2640
Query 2015 ATATAAATCCAATCAAAGGTGGTGTTACTGCCAAAGAGCTTTT-TCATTCATATATTACT 2073
| |||||||| || |||||||| |||| |||||| |||||||| | |||||||||| ||
Sbjct 2641 ACATAAATCCTATTAAAGGTGGCGTTAATGCCAAGGAGCTTTTCT-ATTCATATATCACA 2699
Query 2074 ACTTGGATCGAAGAGAGAAGATG--TTATCTATATGAGTTCTGCAAG-TCAGAAACGGCA 2130
|| ||||| ||||||| ||| | || | ||||||| |||||||| | ||| ||| ||
Sbjct 2700 ACCTGGATTGAAGAGAAAAGGCGAGTT-T-TATATGAACTCTGCAAGCT-AGAGACGTCA 2756
Query 2131 AAATCATGTAGT-GAGATTCAAGGCTTGACCTCTCCTTTAGTTGATGAGATGTATGAGTT 2189
||| |||| || ||||||| || ||||| |||||||| || |||||||||||||||
Sbjct 2757 AAAGCATGC-GTCGAGATTCCGGGATTGACTTCTCCTTTTGTCGATGAGATGTATGAGAG 2815
Query 2190 ACTCAACGCGACACTTGATGAGTATGATATCATCATCAGGCGTTGGCCCGAATATGCGGC 2249
|||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 2816 ACTCAATGGGACACTTGATGAATACGATATCATCATTAGGCGGTGGCCAGAATACGCAAT 2875
Query 2250 ATCCTTGGAGAAACTTGTAGCCGA-TGTGGAGA-GGTCTATTA-TTGAAGC-ATTGGAGA 2305
||||||||||||| ||||||| || | | ||| || | || | ||||||| || |||||
Sbjct 2876 ATCCTTGGAGAAAGTTGTAGCAGACTCAG-AGAAGG-CAAT-AGTTGAAGCCAT-GGAGA 2931
Query 2306 AGCAATTTTCGGA-AGTTTTGTCTCCGTTGAAGGAAAGCAAGGTATCTCCCCTGAAG-TA 2363
| |||||| | || | |||| ||||||||||||||||| || ||| | |||||| |
Sbjct 2932 AACAATTTACTGAGA-TTTTATCTCCGTTGAAGGAAAGTAAAATATTTGGCCTGAAAATT 2990
Query 2364 CGTCCAGAGATTGACAAAAACGGGC-CAATCTAATCTCT-ATGCTGTTCCAAAAGAACTT 2421
||| ||| ||| || ||| || | || |||||| || || ||||||||||||| |||
Sbjct 2991 -GTCAAGAAATTCACCAAA--GG-CACAC-CTAATC-CTTATTCTGTTCCAAAAGAGCTT 3044
Query 2422 GGAGTTCTTTTAAATTCCATGAAAAGAGTGCTTGACACATTACGGTCAAGTATAGAAAAT 2481
||||||||| | || || ||||||||||||||||||| ||||| | || ||||| ||
Sbjct 3045 GGAGTTCTTCTCAACTCAATGAAAAGAGTGCTTGACATTTTACGCCCGAGCATAGAGAAC 3104
Query 2482 CGGTTCAAAGTGT-GGAACTCTTATCTTCCTGACAAAGAAAAGAGAGTTTTGGGAGAGCA 2540
|| |||||| | | |||| || ||| | ||||| |||||| ||||| ||||||||||
Sbjct 3105 CGCTTCAAA-TCTTGGAATTCATATATCCCTGATGGAGAAAACAGAGTCTTGGGAGAGCG 3163
Query 2541 GCTGAGCGAAGTGACTGTACAGCTAAGAGCCAAATTCAGAAGTTACATGCAAGCGCTCGT 2600
| | || || ||||| ||| | ||||| |||||||||||||||| ||||||||||| ||
Sbjct 3164 GTTAAGTGAGGTGACAGTATTGTTAAGATCCAAATTCAGAAGTTATATGCAAGCGCTTGT 3223
Query 2601 GGAGAAACTTGCAGAGAATACGAGGATACAAAGCCACATGA-GAATGAAGAACATCATCC 2659
||||||||||||||| ||||||||||||||||| ||||||| | | |||| ||||||||
Sbjct 3224 GGAGAAACTTGCAGAAAATACGAGGATACAAAGTCACATGAAGC-TAAAGACCATCATCC 3282
Query 2660 ACGACTTACAGG-AAACAACAGCAGAACCAGACGTTAGAAACAGAATGCAGAGT--TTGA 2716
|||||||| ||| |||| ||||| ||||| || ||||||||||||||| | || ||||
Sbjct 3283 ACGACTTA-AGGGAAACCACAGCGGAACCGGATGTTAGAAACAGAATG-AC-GTCATTGA 3339
Query 2717 AAGATTTACTAGACAAGACCATTGATCATCTGCATTGTGTTTTGTCACTC-GATGTGTTT 2775
| ||||| |||||||| ||||| |||||||| || ||||||| | || | |||||||||
Sbjct 3340 AGGATTTGCTAGACAAAACCATCGATCATCTACACGGTGTTTTCTTAC-CAGATGTGTTT 3398
Query 2776 GTATTAATATGCAGAGGAATATGGGACAGACTGGGACAGGATGTTCTGCGGCTTTTGGAA 2835
||| ||| ||||||||||| |||||| || ||||||||||||| || || |||||||||
Sbjct 3399 GTAGCAATCTGCAGAGGAATCTGGGACCGAATGGGACAGGATGTGCTTCGTCTTTTGGAA 3458
Query 2836 GACAG-AAGAGACAAGGTGACTTGGTACAAAGGCCCGAGGATCGCAGTTTCTGTTCTAGA 2894
||||| || ||| || ||||||||| | |||||||| || ||||||||||||||| | ||
Sbjct 3459 GACAGGAA-AGATAATGTGACTTGGCATAAAGGCCCAAGAATCGCAGTTTCTGTTTTGGA 3517
Query 2895 TGAGATATTTGTGACTCAAATGCAAAGCTTACTCGGGAATTCG-TTA-AAGGAAGAGAAT 2952
||| || |||| ||| |||||||||||||| || || || || || ||| ||| |
Sbjct 3518 TGAAATCTTTGCGACACAAATGCAAAGCTTGCTTGGAAA--CGGTTTGAAGCCCGAGCAC 3575
Query 2953 TTGGAGGCACCAAGATCGATGATTGAGCTTC-GATCTATGCTTGTGTAAAGATTC 3006
|||||| |||||||||||||||| || || | | |||||||| || ||||||||
Sbjct 3576 TTGGAGCCACCAAGATCGATGATGGAACT-CAGGTCTATGCTA-TGCAAAGATTC 3628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150500829000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5