BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940515
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10460.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1506 0.0
> AT5G10460.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:3287781-3289948 FORWARD LENGTH=1066
Length=1066
Score = 1506 bits (815), Expect = 0.0
Identities = 919/969 (95%), Gaps = 7/969 (1%)
Strand=Plus/Plus
Query 1 TTCTCGCCGCAGGAAGAAAAATGATCTGTTCCTCGCAGATCTCGCAACCAATGAATGGCC 60
|||||| | |||||||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 22 TTCTCGTCACAGGAAGAAAAATGTTCTGTTCCTCGCAGCTCTCACAGCCAATGAATGGCC 81
Query 61 TCAAAGACATCGTTGAGAC-ACGAAATTTTAAGGCATGGCTCTTAGATCAGTATGGAGTT 119
|||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 82 TCAAAGACATAGTTGAGACGA-GAAATTTTAAGGCTTGGCTCTTAGATCAGTATGGAGTT 140
Query 120 CTTCATGATGGCAAAAAACCGTACCCTGGTGCAATCTCAACATTAAAAAATCTTGCAACA 179
|||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 141 CTTCATGATGGCAAAAAACCTTACCCCGGTGCTATCTCAACATTGAAAAATCTTGCAACA 200
Query 180 GCGGGTGCCAAAATTGTTATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GCGGGTGCCAAAATTGTGATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 260
Query 240 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACTGGAGCTATAACTAGTGGTGAA 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACCGGAGCTATAACTAGTGGTGAA 320
Query 300 CTAACCCATCAATCTTTGCAAAGGAGAGATGATCCTTGGTTCGCTGCACTAGGAAGGAAT 359
||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 321 CTAACTCATCAATCTTTGCAGAGGAGAGATGATCCTTGGTTTGCTGCACTGGGAAGGAGG 380
Query 360 TGCATTCACATGACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TGCATTCACATTACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 440
Query 420 GTTGTGGAGGATGTGGAAGAAGCTGACTTTGTTTTAGCACACGGCACTGAAGCCCTAGGA 479
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 441 GTTGTGGAGAATGTGGAAGAAGCTGACTTTGTTTTAGCGCACGGCACTGAAGCCCTAGGA 500
Query 480 CATCCTTCAGGCAGTGTATCTCCAAGGACTCTCGATGAGCTTGAGGAGATTTTGGAGAAA 539
| |||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 501 CTTCCTTCAGGCAGTGTATCTCCAAGGACTATTGATGAGCTAGAGAAGATTTTGGAGAAA 560
Query 540 TCTGCAGCTCGAGGACTTCCCATGATCGTTGCTAATCCAGATTATGTGACTGTTGAAGCA 599
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 561 TCTGCAGCTCGAGGACTTCCCATGATCGTAGCTAATCCAGATTACGTGACTGTTGAAGCA 620
Query 600 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 680
Query 660 GTGAAATGGATGGGAAAACCTCATAAGATGATCTATGAGTCGGCTATAGCAATTGCGGGA 719
||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 681 GTGAAGTCGATGGGAAAACCTCATAAGATGATCTATGAGTCTGCTATAGCAATTGCGGGA 740
Query 720 GTCAATCCATCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAAGGGTGCA 779
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 741 GTCAATCCGTCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAGGGGAGCA 800
Query 780 AATGTTTCAGGAATTGAGTCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AATGTTTCAGGAATTGAATCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 860
Query 840 CTCACTTCTTTTGATGAAACTGCAAGTCTGGACTCAGTGAAGACCCTTACTGCTAAACAC 899
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 861 CTCACTTCTTTTGATGAAACTGCAAGTCTAGACTCAGTCAAGACCCTTACTGCTAAACAC 920
Query 900 AATGCATTCCCAACTTATGTTTTATCGGCCTTTAAATGGTAATTTTCATT--GT---ACA 954
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || |||
Sbjct 921 AATGCATTCCCAACTTATGTATTATCAGCCTTTAAATGGTAGTTTTCGTTTTGTTGTACA 980
Query 955 AATCATATT 963
|||||||||
Sbjct 981 AATCATATT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5