BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940517
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10480.3 | Symbols: PAS2 | Protein-tyrosine phosphatase-like... 1048 0.0
> AT5G10480.3 | Symbols: PAS2 | Protein-tyrosine phosphatase-like,
PTPLA | chr5:3297806-3300151 REVERSE LENGTH=1037
Length=1037
Score = 1048 bits (567), Expect = 0.0
Identities = 684/735 (93%), Gaps = 29/735 (4%)
Strand=Plus/Plus
Query 4 TTCTCGCTTAGTCACTTTCCATGGCGGGCTTTCTCTCCGTCGTCCGGCGCGTATACCTCA 63
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 84 TTCTCGCGTATTCACTTTCCATGGCGGGCTTTCTCTCCGTTGTCCGGCGCGTGTACCTCA 143
Query 64 CACTCTACAATTGGATCGTCTTTGCTGGATGGGCTCAGGTTTTGTACTTAGCGATAACGA 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CTCTCTACAATTGGATCGTCTTTGCTGGATGGGCTCAGGTTTTGTACTTAGCGATAACGA 203
Query 124 CGTTGAAGGAAACGGGATATGAAAATGTGTATGACGCCATTGAGAAGCCTCTCCAGCTTG 183
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 204 CGTTGAAGGAAACGGGTTATGAGAATGTCTATGACGCCATTGAGAAGCCTCTCCAGCTTG 263
Query 184 CTCAGACTGCCGCCGTTCTCGAGATTCTTCATGGATTAGTAGGTTTGGTCAGATCTCCTG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CTCAGACTGCCGCCGTTCTCGAGATTCTTCATGGATTAGTAGGTTTGGTCAGATCTCCTG 323
Query 244 TTTCTGCAACTCTGCCACAGATAGGTTCAAGGCTATTTCTCACTTGGGGAATCCTATACA 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 324 TTTCTGCAACTCTGCCACAGATAGGTTCAAGGCTATTTCTCACTTGGGGCATCCTATACA 383
Query 304 GTTTTCCAGAGGTCCGATCTCATTTTCTTGTTACGTCCCTGGTCATAA----G-C--T-- 354
||||||||||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 384 GTTTTCCAGAGGTCCGATCTCATTTTCTTGTTACGTCGCTGGTCATAAGCTGGTCTATCA 443
Query 355 --G-G--T-CTAT--C-AC--GGA-----G--ATTATTCGCTACTCCTTCTTTGGCTTTA 396
| | | |||| | || ||| | |||||||||||||| ||||| |||||||
Sbjct 444 CAGAGTTTCCTATCACAACATGGATTGTTGAAATTATTCGCTACTCATTCTTCGGCTTTA 503
Query 397 AGGAAGCTCTAGGCTTTGCGCCTTCATGGCACTTGTGGCTCAGATATAGCAGCTTTTTGT 456
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 504 AGGAAGCTCTAGGCTTTGCACCTTCATGGCACTTGTGGCTCAGATACAGCAGCTTTTTAT 563
Query 457 TGCTATACCCTACCGGTATCACCAGTGAAGTTGGTCTTATCTACCTTGCCTTACCACACA 516
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 564 TGCTATACCCTACCGGTATCACCAGCGAAGTTGGTCTTATCTACCTTGCCTTACCACACA 623
Query 517 TCAAGACATCGGAGATGTACAGCGTGAGGATGCCTAACACATTGAACTTCTCATTCGACT 576
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 624 TCAAGACATCGGAGATGTACAGCGTTAGGATGCCTAACATATTGAACTTCTCATTTGACT 683
Query 577 TCTTCTATGCAACGATACTTGTCCTTGCAATCTATGTCCCAGGTAGTCCACACATGTACA 636
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 684 TCTTCTATGCAACGATACTCGTCCTTGCAATCTATGTCCCAGGTAGCCCACACATGTACA 743
Query 637 GGTACATGCTTGGTCAGCGAAAGAGAGCTCTCTCCAAATCCAAGAGGGAATaaaa-aaa- 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 744 GGTACATGCTTGGTCAGCGAAAGAGAGCTCTCTCCAAATCCAAGAGGGAATAAAAGAAAA 803
Query 695 GCTTTAGAAAGAGAC 709
| |||||||||||||
Sbjct 804 GATTTAGAAAGAGAC 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5