BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940518
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300225-330476... 3321 0.0
> AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300225-3304761
REVERSE LENGTH=2391
Length=2391
Score = 3321 bits (1798), Expect = 0.0
Identities = 1973/2060 (96%), Gaps = 2/2060 (0%)
Strand=Plus/Plus
Query 3 CATTGACTCTGCTCAAACTATGGCCCTTTATGGTACATTGCAGTTGTCCCATAGTCTGGG 62
|||||| |||| | ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 200 CATTGAATCTGATTAAAATATGGCCCTTTATGGTACATTGCAGTTGTCTCATAGTCTGGG 259
Query 63 TTTTTGCAGAAACCAAAGGTGCTATAATCCAGAAAATAGTGCCATGAGAAGGAGGCTGCA 122
||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 260 TTTGTGCAGAAACCAACGGTTTTGTAATCCAGAAAATAGTGCCATGAGAAGGAGGCTGCA 319
Query 123 TATTTCAAATGGTCCTCTCTCATTAGGTGTTCCGTTGGGACAACATGGTTTCAGCAATTT 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 TATATCAAATGGTCCTCTCTCATTAGGTGTTCCGTTGGGACAACATGGTTTCAGCAACAT 379
Query 183 ATTACTCTCGGATTACCTTCGTAGGCAAATTTATTCAGTCCCATGCAGGACCACCGCTTT 242
||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||||||
Sbjct 380 ATTACTCTCAAATTACCTTCGTAGGCCTATTTGTTCAGTTCCATGCAGAACCACCGCTTT 439
Query 243 TAGGTGTCATTCCTTTTCTGCAGGAGGCAAGGCAATTGAACCTGCTGTTAAAGCTGTCAC 302
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 440 TAGGTGTCATTCCTTTTCTGCAAGCGGCAAGGCAATTGAACCTGCTGTTAAAGCTGTCAC 499
Query 303 CGTGGTGCTAACAAAGTCACACGGGTTGATACAACAATTCCCTTTTGTATATAAGTTGGT 362
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 500 CGTGGTGCTAACAAAGTCACACGGGTTGATGCAACAATTCCCTTTTGTATATAAATTGGT 559
Query 363 TCCAGCTGTTGCTCTTCTTGTTTTCTCCCTGTGGGGTCTAGTGCCTTTTGTTCGCCAAGG 422
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 560 TCCAGCTGTTGCTCTTCTTGTTTTCTCCCTGTGGGGTCTAGTGCCTTTTGCTCGCCAAGG 619
Query 423 AAGAAACATACTACTCAATAAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AAGAAACATACTACTCAATAAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGT 679
Query 483 TATGACCTCATATGTTCAACCTCTGCTACTATGGTTAGGAGCTCTATTCATCTGCAGGGC 542
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 680 TATGACTTCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAGGGC 739
Query 543 ATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGATCGACTTTTGAA 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 740 ATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGATCGACTGTTGAA 799
Query 603 TTTTGTGAGATCATTGTCAACGGTACTTGCATTTGCTTACTGCATATCCAGTCTTATCCA 662
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 800 TTTTGTGAGGTCATTGTCAACGGTACTTGCATTTGCTTACTGCTTATCCAGTCTTATCCA 859
Query 663 ACAAACACAAAAGCTCTTCTCAGAAACGAGTAATCCGAGCGATACAAGAAATATGGGATT 722
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACAAACACAAAAGCTATTCTCAGAAACGAGTAATCCGAGCGATACAAGAAATATGGGATT 919
Query 723 TCAATTTGCTGGGAAAGCAGTGTATTCTGCTGTATGGGTTGCTGCTGTGTCACTTTTCAT 782
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 920 TCAATTTGCTGGGAAAGCATTGTATTCTGCTGTATGGGTTGCTGCTGTATCACTTTTCAT 979
Query 783 GGAGTTGCTGGGTTTCTCTACACAAAAATGGCTCACTGCTGGAGGTCTTGGGACAGTTTT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 GGAGTTGCTGGGTTTCTCTACACAAAAATGGCTCACTGCTGGAGGTCTTGGGACAGTTTT 1039
Query 843 GATTACTCTTGCTGGCCGAGAGATTTTGACAAACTTTCTTTCAAGTGTTATGATTCATGC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GATTACTCTTGCTGGCCGAGAGATTTTGACAAACTTTCTTTCAAGTGTTATGATTCATGC 1099
Query 903 AACCCGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATAGAAGGTTATGAAGTGTC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AACCCGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATAGAAGGTTATGAAGTGTC 1159
Query 963 TGGTACTGTGGAGCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGGTACTGTGGAGCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGA 1219
Query 1023 GGCAATCCACATCCCAAACCATAAGTTCACAGTCAATGTCGTGAGAAATCTTACTCAGAA 1082
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1220 GGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTACTCAGAA 1279
Query 1083 AACTCATTGGCGTATCAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAA 1142
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AACTCATTGGCGTATTAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAA 1339
Query 1143 TAATATTGTAGCTGACATGCGGAAAGTGTTGGCCAAGAATCCTATGGTTGAGCAGCAGAG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TAATATTGTAGCTGACATGCGGAAAGTGTTGGCCAAGAATCCTATGGTTGAGCAGCAGAG 1399
Query 1203 GTTACATCGAAGGGTATTCTTGGAGAATGTCATTCCAGAAAATCAGGCCCTCTCGATACT 1262
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 GTTACATAGAAGGGTATTCTTGGAGAATGTCATTCCAGAAAATCAGGCCCTCTCGATACT 1459
Query 1263 GATCTCTTGCTTTGTGAAGACGTCTCATCACGAAGAATACTTGGGTGTAAAGGAAGCTAT 1322
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1460 GATCTCTTGCTTTGTGAAGACGTCTCATCACGAAGAATATTTGGGTGTAAAGGAAGCTAT 1519
Query 1323 ATTGTTGGACCTTCTTAGAGTCATAAGCCACCACAGAGCTCGTCTAGCTACACCAATCCG 1382
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1520 ATTGTTGGACCTTCTTAGAGTCATAAGCCACCACCGAGCTCGTCTAGCTACACCAATCCG 1579
Query 1383 TACAATCCGTAAGATGTACACAGACG-CTGACATGGAAAACGCACCATTTGGTGAATCGA 1441
|||||||||||||||||||||||| | ||||| |||||||| |||||||||| |||||||
Sbjct 1580 TACAATCCGTAAGATGTACACAGA-GACTGACGTGGAAAACACACCATTTGGGGAATCGA 1638
Query 1442 TGTATGGAGGTGTTACTTCTCGGCGGCCTTTGATGCTAATTGAACCCGCTTACAAAATCA 1501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TGTACGGAGGTGTTACTTCTCGGCGGCCTTTGATGCTAATTGAACCCGCTTACAAAATCA 1698
Query 1502 ATGGAGAAGACAAATCAAAATCTCAAAACCGTGCATCAAAACCAACCGCAGAGCAAGAAA 1561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1699 ATGGAGAAGACAAATCAAAATCTCAAAACCGTGCAGCAAAACCAACCGCAGAGCAAGAAA 1758
Query 1562 ACAAGGGTTCGAGTCCAAAGTCAAAAGAAACGTCTTCACCTGATCTAAAGGCGAATGTAA 1621
||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1759 ACAAGGGCTCGAATCCAAAGTCAAAAGAAACGTCTTCTCCTGATCTAAAGGCGAATGTGA 1818
Query 1622 AAGTTGGAGAATCCTCGGTTTCTGATACCAACAAAGTACCTGAAGAAACGGTAGCAAAGC 1681
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1819 AAGTTGGAGAATCCCCTGTTTCTGATACCAACAAAGTACCTGAAGAAACAGTAGCAAAGC 1878
Query 1682 CAGTAATCAAAGCGGTCTCTAAACCGCCCACCCCAAAGGATACAGAAACATCAGGAACTG 1741
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 CAGTAATCAAAGCGGTCTCAAAACCGCCCACCCCAAAGGATACAGAAACATCAGGAACTG 1938
Query 1742 AGAAACCAAAGGCCAAGAGAAGTGTTAGCACAACAAAGTCACCAAAGTCGGATGAAACAG 1801
|||||||||||||||||||||||| | |||||| ||| ||| ||||| | ||||||||||
Sbjct 1939 AGAAACCAAAGGCCAAGAGAAGTGGTGGCACAATAAAATCAACAAAGACAGATGAAACAG 1998
Query 1802 ATACTTCGTCATCATCATCATCGAGATCAGCTTTGGAAGAGAACATAGTACTGGGTGTTG 1861
||| ||| |||||||| | || |||||| |||| |||||||| ||||||||||||||||
Sbjct 1999 ATAGTTCAACATCATCAGCGTCTAGATCAACTTTAGAAGAGAATATAGTACTGGGTGTTG 2058
Query 1862 CACTGGAGGGCTCAAAGAGAACACTTCCAATCGAAGAAGAGATACATTCTTCTTCCATGG 1921
|||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2059 CACTAGAAGGCTCAAAGAGAACACTTCCAATCGAAGAAGAGATACATTCTCCTCCCATGG 2118
Query 1922 AAACAGATGCCAAAGAACTCACTGGTGCTCGCAGATCCGGTGGAAACGGACCATTGGTTG 1981
|||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |
Sbjct 2119 AAACAGATGCTAAAGAACTCACGGGAGCTCGCAGATCCGGTGGAAATGGACCATTGGTGG 2178
Query 1982 CTGATAAGGAGCAGAAAGATGGCCAATCTCAACCAAACTCAGGTGCTTCGAGCGAGCAGT 2041
|||||||||| ||||||||| ||||||| |||||||||||||||||||| | ||||| ||
Sbjct 2179 CTGATAAGGAACAGAAAGATAGCCAATCACAACCAAACTCAGGTGCTTCAACCGAGCCGT 2238
Query 2042 GATATGAAATTCAATGAGTT 2061
|| |||||||||||||||||
Sbjct 2239 GAGATGAAATTCAATGAGTT 2258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102258510165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5