BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940520
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:331552... 1317 0.0
AT3G32377.1 | Symbols: | pseudogene, similar to aintegumenta-l... 111 2e-23
AT3G31908.1 | Symbols: | pseudogene, similar to aintegumenta-l... 111 2e-23
AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 | chr5:261858... 108 2e-22
> AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315529-3320202
FORWARD LENGTH=2471
Length=2471
Score = 1317 bits (713), Expect = 0.0
Identities = 819/866 (95%), Gaps = 24/866 (3%)
Strand=Plus/Plus
Query 928 GTGGATATGACAAAGAAGATAAGGCAGCTCGAGCTTACGATTTAGCGGCTCTTAAATACT 987
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1436 GTGGATATGACAAAGAAGATAAGGCAGCTCGAGCTTACGATTTAGCAGCTCTGAAATACT 1495
Query 988 GGAATGCTACTGCTACTACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAA 1047
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAA 1555
Query 1048 TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTGAGGAGGAAGAGTAGCGGTTTCT 1107
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1556 TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTCT 1615
Query 1108 CTAGAGGAGCTTCGATATACCGAGGTGTGACAAGGCATCATCAACAAGGACGTTGGCAAG 1167
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1616 CTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAG 1675
Query 1168 CAAGGATTGGCCGTGTCGCCGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAG 1227
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAG 1735
Query 1228 AGGAAGCAGCTGAAGCGTACGACATAGCAGCAATCAAGTTCAGAGGAATAAACGCTGTAA 1287
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1736 AGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAA 1795
Query 1288 CTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCCCTTCCCATCG 1347
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1796 CTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCATCG 1855
Query 1348 GTGGTGCAGCTAAACGTCTTAAGCTCTCTTTGGAAGCTGCT--T-CATCAGAGCAGAAAC 1404
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1856 GTGGTGCAGCTAAACGTCTTAAGCTCTCTTTGGAAGCTGCTGCTTCATCAGAGCAGAAAC 1915
Query 1405 CAATCCTAGGTCATCAGC---TTCACCATTTCCAGCAACAGCAGCAACAACAACAACAGC 1461
||||||| |||||||| | ||||||||||||||||||| | ||||||||||||||||
Sbjct 1916 CAATCCTCGGTCATCATCAACTTCACCATTTCCAGCAACA--A-CAACAACAACAACAGC 1972
Query 1462 TTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTTGCTCTCTGTCCTAATTCAG 1521
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1973 TTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTCGCTCTCTGTCCTAATTCAG 2032
Query 1522 CAGTTCAGTCTCAACAGATTATTCCATGTGGAATTCCTTTTGAAGCAGCTGCTCTTTACC 1581
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 2033 CAGTTCAGTCTCAACAGATCATTCCTTGTGGAATCCCTTTTGAAGCAGCTGCTCTTTACC 2092
Query 1582 ACCACCA--A-CAACA---GCAACA--A-CAGCAGCA--A-CA---GAACTTCTTCCAGC 1626
||||||| | ||||| |||||| | |||||||| | || ||||||||||||||
Sbjct 2093 ACCACCACCAACAACAACAGCAACACCAACAGCAGCAGCAGCAACAGAACTTCTTCCAGC 2152
Query 1627 ATTTTCCCGCAAATGCAGCTTCTGACTCGACCGGGTCTAATAACAACTCCAACGTTCAGG 1686
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2153 ATTTTCCGGCGAATGCAGCTTCTGACTCGACCGGGTCTAACAACAACTCCAACGTTCAGG 2212
Query 1687 GAACAATGGGACTTATGGCGCCGAATCCGGCTGAGTTCTTCCTCTGGCCTAATCAGTCTT 1746
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2213 GAACAATGGGACTTATGGCACCAAATCCGGCTGAGTTCTTCCTCTGGCCTAATCAGTCTT 2272
Query 1747 ACTAAAACCAATCATATGAGTTGATT 1772
||||||||||||||||| ||||||||
Sbjct 2273 ACTAAAACCAATCATATAAGTTGATT 2298
Score = 1297 bits (702), Expect = 0.0
Identities = 854/922 (93%), Gaps = 32/922 (3%)
Strand=Plus/Plus
Query 19 TGATGGCTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGT 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TGATGGCTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGT 523
Query 79 CATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTT 583
Query 139 ATCTCCTCGATAATTTCTATGGTTGGACGAACCAAAAACCACAGGAGTTTTTCAAAGAAG 198
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 584 ATCTCCTCGATAATTTCTATGGTTGGTCAAACCAAAAACCTCAGGAGTTTTTCAAAGAAG 643
Query 199 AAGCTCAGTTAGCAGCAGC---TTCAATGGCGGATTCAACAATCTTAACAACATTCGTAG 255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAGCTCAGTTAGCAGCAGCAGCTTCAATGGCGGATTCAACAATCTTAACAACATTCGTAG 703
Query 256 ACCCACAATCTCAT--T-CTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACT 312
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ACCCACAATCTCATCATTCTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACT 763
Query 313 CTTCTTCTATCGTTCGTTTCTCTGACAACAGTCAAACCGATACTCAAGACTCTTCCCTCA 372
|||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 764 CTTCTTCTATCGTTCGTTACTCCGACAACAGTCAAACCGACACACAAGACTCTTCCCTCA 823
Query 373 CTCAAATCTACGATCCACGTCACCACCACCATAACCCCAACCAAACCGGGTTTTACTCCG 432
|||||||||||||||||||||||||||| ||||| || | |||| ||||||||||
Sbjct 824 CTCAAATCTACGATCCACGTCACCACCA---TAACC--AA--A--CCGGCTTTTACTCCG 874
Query 433 ATCACCACGATTTCAAAACCATGGCCGGTTTTCAAACCGCTTTCTCGACTAACTCCGGTT 492
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 875 ATCACCACGATTTCAAAACCATGGCCGGTTTTCAATCCGCTTTCTCTACTAACTCCGGTT 934
Query 493 CAGAGGTCGATGACTCTGCTTCAATCGGACGGACTCATCTTACTGGAGAGTATTTGGGAC 552
|||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct 935 CAGAGGTCGATGACTCTGCTTCTATCGGAAGGACTCATCTTGCTGGAGACTATTTGGGAC 994
Query 553 ACGTGGTTGAATCTTCCGGACCAGAGCTAGGGTTTCACGGTGGATCTACAGGAGCTTTGT 612
|||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct 995 ACGTGGTTGAATCTTCTGGTCCGGAGCTAGGGTTTCACGGTGGATCTACCGGAGCTTTGT 1054
Query 613 CACTTGGGGTTAACGT---TAACAATACGAATCACCGGAATGATCATGATAGTAATCA-- 667
||||||| |||||||| ||||||||| ||||||||||||||| |||||| | || |
Sbjct 1055 CACTTGGTGTTAACGTCAATAACAATACTAATCACCGGAATGATAATGATAATCATTACC 1114
Query 668 GATTACTAATCATCATTACCGAG-GTAAT-AACAACGGTGACAGAATCAACAATGAGAAC 725
|| | ||| | || | ||| | ||| |||||| ||| | ||||||||| |||
Sbjct 1115 GAGG-C-AATAA-CAATGGTGAGAG-AATCAACAACA---ACA-A--CAACAATGACAAC 1164
Query 726 GAGAAGACAGATTCTGAGAAGGAGAAAGCTGTTGTAGCTGTGGAAACATCAGATTGTTCT 785
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1165 GAGAAGACAGATTCTGAGAAGGAGAAGGCTGTTGTGGCTGTGGAAACATCAGATTGTTCT 1224
Query 786 AATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGA 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGA 1284
Query 846 CATAGATGGACGGGAAGATATGAAGCTCATCTATGGGATAATAGCTGTAGGAGAGAAGGT 905
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1285 CATAGATGGACGGGAAGATATGAAGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGT 1344
Query 906 CAGGCCAGGAAGGGACGTCAAG 927
||||||||||||||||||||||
Sbjct 1345 CAGGCCAGGAAGGGACGTCAAG 1366
> AT3G32377.1 | Symbols: | pseudogene, similar to aintegumenta-like
protein, blastp match of 59% identity and 1.0e-09 P-value
to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like
protein {Oryza sativa} | chr3:13311477-13313243 REVERSE LENGTH=1767
Length=1767
Score = 111 bits (60), Expect = 2e-23
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 1017 ATTACGAATTACTCGAAAGAAGTGGAGGAAATGAAGCACATGACCAAGCAAGAGTTCATT 1076
||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 725 ATTACCAATTACTGGAAAGAATTGGAGGAAATGAAGCACATGACCAAGCAAGAGTTCATT 784
Query 1077 GCCTCCCTGAGGAGG-AAG 1094
|||||| | |||||| |||
Sbjct 785 GCCTCCTTCAGGAGGTAAG 803
> AT3G31908.1 | Symbols: | pseudogene, similar to aintegumenta-like
protein, blastp match of 58% identity and 3.6e-07 P-value
to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like
protein {Oryza sativa} | chr3:12902409-12903522 REVERSE LENGTH=1114
Length=1114
Score = 111 bits (60), Expect = 2e-23
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 1017 ATTACGAATTACTCGAAAGAAGTGGAGGAAATGAAGCACATGACCAAGCAAGAGTTCATT 1076
||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATTACCAATTACTGGAAAGAATTGGAGGAAATGAAGCACATGACCAAGCAAGAGTTCATT 408
Query 1077 GCCTCCCTGAGGAGG-AAG 1094
|||||| | |||||| |||
Sbjct 409 GCCTCCTTCAGGAGGTAAG 427
> AT5G65510.1 | Symbols: AIL7 | AINTEGUMENTA-like 7 | chr5:26185829-26189413
FORWARD LENGTH=1497
Length=1497
Score = 108 bits (58), Expect = 2e-22
Identities = 112/136 (82%), Gaps = 11/136 (8%)
Strand=Plus/Plus
Query 25 CTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGTCATCTG 84
|||| |||||||| || |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 8 CTCCAATGACGAATTGCTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAAATCAACTG 67
Query 85 ATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCT-CTCCTTATCTC 143
|||||||||| || ||| | | | ||||| || || ||| || | |||||||||||
Sbjct 68 ATCAGTCTCACTT---CTC-T-T--C--TTCTTACGACGATTCTTC-TACTCCTTATCTC 117
Query 144 CTCGATAATTTCTATG 159
||||||| |||||||
Sbjct 118 ATCGATAACTTCTATG 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5