BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940522
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10530.1 | Symbols: | Concanavalin A-like lectin protein ki... 3070 0.0
> AT5G10530.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=1956
Length=1956
Score = 3070 bits (1662), Expect = 0.0
Identities = 1863/1960 (95%), Gaps = 14/1960 (1%)
Strand=Plus/Plus
Query 21 ATGGCCAAC-CCAGTCTTGTTCTTTTCCTTTGCTTTGGTTCTCCCTGTTGTCTGTTCAGT 79
||||||||| | | || |||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1 ATGGCCAACTCAATTC-TGTTATTTTCCTTTGTTTTGGTTCTCCCTTTTGTCTGTTCAGT 59
Query 80 TCAATTTAACATATCTCGTTTTGGGTCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TCAATTTAACATATCTCGTTTTGGATCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 119
Query 140 AAGAGCAAATGGGGCTGTTGAGCTTACCAACAGTGACTACACATGCCGTGCCGGTTGGGC 199
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 AAGAGCAAATGGGGCTGTTGAGCTTACCAACATTGACTACACATGCCGTGCCGGTTGGGC 179
Query 200 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 239
Query 260 TACGCGTTTCTCCTTCAGAATTGATACTCGGAATGTTGGGTATGGCAATTACGGTCATGG 319
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 240 TACGCGTTTCTCCTTCAGAATTGATACCCGTAATGTTGGGTATGGTAATTACGGTCATGG 299
Query 320 GTTCGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTTGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 359
Query 380 CTTGGGTCTATTCAATGGAACCAATGATCAGTCTTCTGCTTTCCCACTTGTTCATGTCGA 439
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 360 CTTGGGTCTATTCAATGGAACCAATAATCAGTCTTCTGCTTTCCCACTTGTTTATGTCGA 419
Query 440 ATTCGACACATTTACTAATCCAGAATGGGATCCTCTCGACATCAAATCTCATGTGGGAAT 499
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 420 GTTCGACACATTTACTAATCCAGAATGGGATCCTCTCGATGTCAAATCCCATGTAGGAAT 479
Query 500 CAACAACAACTCTCTTGTTTCCTCTAACTACACTTCTTGGAATGCAACCTCACACAACCA 559
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 CAACAACAACTCTCTTGTTTCTTCTAACTACACTTCTTGGAATGCAACGTCACACAACCA 539
Query 560 AGATATAGGCCGTGTACTGATCTTCTATGATTCGGCTAGAAGAAACTTGAGTGTCTCTTG 619
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AGATATAGGCCGTGTCCTGATATTCTATGATTCCGCTAGAAGAAACTTGAGTGTCTCTTG 599
Query 620 GACTTACGACTTAACATCTGATCCTCTGGAGAATCCAAGCCTATCTTACATCATTGATCT 679
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 GACTTACGACTTAACATCTGATCCTCTGGAGAATTCAAGCCTATCTTACATCATTGATCT 659
Query 680 CTCAAAGATACTGCCATCAGAAGTTACAATCGGGTTTTCTGCGACATCTGGAGGGGTCAC 739
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 CTCAAAGGTACTGCCATCAGAAGTTACAATTGGGTTTTCTGCGACATCTGGAGGGGTCAC 719
Query 740 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 779
Query 800 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTTGTTTT 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTCGTTTT 839
Query 860 CCTGACCTTTTTTATTGCCTCTCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 919
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTGACCTTTTTTATTACCTCGCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 899
Query 920 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTTGAAAGAGGAGCAGGACC 979
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTCGAAAGAGGAGCAGGACC 959
Query 980 GAA-AAAGTTTACTTATAAAGAGCTTGCATCAGCTGCTAATAACTTCGCAGATGATAGGA 1038
|| |||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 960 -AAGAAAGTTTACTTATAAAGATCTTGCATCAGCTGCAAACAATTTCGCAGATGATAGGA 1018
Query 1039 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1078
Query 1099 TGGTTGCAATAAAGAAGTTTGCTGGCGGGTCAAAGCAGGGAAAGAGAGAGTTCGTAACTG 1158
||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||| |
Sbjct 1079 TGGTTGCGATAAAGAAGTTTGCGGGTGGGTCTAAGCAGGGAAAAAGAGAGTTCGTAACCG 1138
Query 1159 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1198
Query 1219 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGTCTCGACGCCC 1278
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1199 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGCCTTGACGCCC 1258
Query 1279 ATCTTTTTGGTAAAAAGCCGCATCTCGCTTGGCCTGTGAGATGCAAAATAACTCTTGGTA 1338
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1259 ATCTATTTGGTAAAAAGCCGCATCTCGCTTGGCATGTGAGATGCAAAATAACTCTCGGTC 1318
Query 1339 TCGCCTCTGCGCTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTGCACAGAGACA 1398
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 TCGCCTCTGCACTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTACACAGAGACA 1378
Query 1399 TCAAGCCGAGTAATGTGATGCTGGATTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1458
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1379 TCAAGGCGAGTAATGTGATGCTCGACTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1438
Query 1459 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACGGGGATAGCAGGAACATTTG 1518
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1439 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACAGGGTTAGCAGGAACATTTG 1498
Query 1519 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTTTATA 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTGTATA 1558
Query 1579 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCCAAGACAAG 1638
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1559 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCGAAGACAAG 1618
Query 1639 GAAGAGTGGAGCCTGAAACAAGCCTTTTAGAGAAAGTGTGGGATCTCTATGGAAAAGGAG 1698
||||||| ||||||| ||||| |||| |||||||| ||||||| || |||||||||||||
Sbjct 1619 GAAGAGTAGAGCCTGTAACAAACCTTGTAGAGAAAATGTGGGACCTTTATGGAAAAGGAG 1678
Query 1699 AAGTTATCACAGCAATCGACGAGAAACTCAGGATTGATGGTTTTGATGAGAAGCAAGCAG 1758
||||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||||||
Sbjct 1679 AAGTTATTACAGCTATCGACGAGAAACTCAGGATCGGTGGTTTCGATGAGAAACAAGCAG 1738
Query 1759 AATGTCTCATGATTGTAAGGCT-ATGGTGTGCTCATCCTGATAG-AAACTCGAGGCCTTC 1816
||||||||||||||||| || | ||||||||||||||||||| | |||| ||||||||||
Sbjct 1739 AATGTCTCATGATTGTA-GGATTATGGTGTGCTCATCCTGAT-GTAAACACGAGGCCTTC 1796
Query 1817 GATAAAACAAGCGATCCAAGTCTTGAATTTTGAAGCAGCATTGCCTCATCTTCCGACCAA 1876
||||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1797 AATAAAACAAGCAATCCAAGTCTTGAATCTTGAAGCACCAGTGCCTCATCTTCCGACCAA 1856
Query 1877 AATGCCTGTTGCTACATATCATGTATCATCTTCGAATACTACATCGGTTAGCTCTGCT-- 1934
||||||||| || |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1857 AATGCCTGTCGCAACATATCATGTATCCTCTTCGAATACTACATCGGTAAGCTCTGGTGG 1916
Query 1935 A-CT--G-TAACATTTTCAAGTGCTCAACATGGCCGTTGA 1970
| || | |||| |||||||||||||||||||| ||||||
Sbjct 1917 AGCTACGGTAACGTTTTCAAGTGCTCAACATGGTCGTTGA 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5