BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940535
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10660.2 | Symbols: | calmodulin-binding protein-related | ... 1753 0.0
AT5G10680.1 | Symbols: | calmodulin-binding protein-related | ... 342 4e-93
AT5G24880.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 241 2e-62
> AT5G10660.2 | Symbols: | calmodulin-binding protein-related
| chr5:3370518-3372348 FORWARD LENGTH=1394
Length=1394
Score = 1753 bits (949), Expect = 0.0
Identities = 1127/1207 (93%), Gaps = 35/1207 (3%)
Strand=Plus/Plus
Query 1 TCGTTATTTGATTTCTTAATAATGGCAACGACGTCTAGTACAACGAAAACGAAACCGGAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 15 TCGTTATTTGATTTCTTAATAATGGCAACGACGTCTAGTACAACGAAAACGAAA-CGGGA 73
Query 61 AAAC-CAAACCTAACCAGATCAAAATCACTGGGCAGAAAGCCAAAGCCGGTCTCATCATC 119
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 74 CAACAAAAACCTAACCAGATCAAAATCACTCGGCAGAAAGCCAAAGCCGGTCTCATCATC 133
Query 120 AGAACCTGAAGCGAACGCAGATGGATCTGATCGGAAAACAATTGGGAAGCCTTTGCCTAA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AGAGCCTGAAGCGAACGCAGATGGATCTGATCGGAAAACAATTGGGAAGCCTTTGCCTAA 193
Query 180 TTATCTGAAACCAACAATCAGCTCGAGACCTGACCCGGTCAAGTTCTTGAGGAAGAACAA 239
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 194 TTATCTGAAACCTACAATCAGCTCGAGACCGGACCCGGTCAAGTTCTTGAGAAAGAACAA 253
Query 240 CGCTGTCGAAGACAATCAGAAGCTTCTTCGTAGACGATCCTTTGATCATCCTCCTTCGTC 299
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CGCCGTCGAAGAAAATCAGAAGCTTCTTCGTAGACGATCCTTTGATCATCCTCCTTCGTC 313
Query 300 TTTGACTTCTCCATCAACTTCATCATCCC-TGAAATCTCTCAATACCTCTCCTG--CA-- 354
||||||||||||||||||||||||| ||| | | |||||||||||||||||||| ||
Sbjct 314 TTTGACTTCTCCATCAACTTCATCAGCCCAT-AGATCTCTCAATACCTCTCCTGCCCACC 372
Query 355 CAC-CC-ACGAGACAAACCCGCGGTTCCAAGGGAGAAGCCTGTCACTGGTCTGCGTTCTA 412
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CACACCTGCGAGACAAACCCGCGGTTCCAAGGGAGAAGCCTGTCACTGGTCTGCGTTCTA 432
Query 413 CATCTTTCCATGGAAGCAGCAGAGGCGGTCTCAGAGGAAGCAGTACGGTGAAATCACCTC 472
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 433 CATCTTTCCATGGAAGCAGCAGGGGAGGTCTCAGAGGAAGCAGTACGGTGAAATCACCTC 492
Query 473 CTGTGGCTTCAAGAGGATCTCCAGGGGTAAAGAAGAGCGGTCTAAGCGGTAGCAGCTCTT 532
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 493 CTGTGGCTTCAAGAGGATCTTCAGGGGTAAAGAAGAGCGGTCTAAGCGGTAACAGTTCTT 552
Query 533 CCAAGAGCAAAAAGGAAGGTTCTGCGAATGTTCCCAAGAAATCTTCGGGTAAAGAGATTT 592
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 553 CCAAGAGCAAAAAGGAAGGTTCTGGGAATGTTCCCAAGAAGTCTTCGGGTAAAGAGATTT 612
Query 593 CCCCGGAATCTTCTCCTCTTGCGCCTGCTCACGAGGACGAAGAAGAGATTGTGAAGGTTG 652
||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 613 CCCCGGATTCTTCTCCTCTTGCGTCTGCTCACGAAGACGAAGAAGAGATTGTCAAGGTTG 672
Query 653 AGACCGATGTACACATTTCTGACCACAGAGAAGAACCGAAAGAGGAAGATAAAGATCAGG 712
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 673 AGACCGATGTACACATTTCTGACCACGGAGAGGAACCGAAAGAGGAAGATAAAGATCAGT 732
Query 713 TTGCACAACAGGATGAATCCGGTGAAGAGAAGGAGACCAGTCCAGTGGCTGCCTCCACAA 772
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTGCACAACCGGATGAATCCGGTGAAGAGAAGGAGACCAGTCCAGTGGCTGCCTCCACA- 791
Query 773 GTCCAGTGGCTGCCTCCACAGAAGAAGAAAAAGGAGAACTGATTC-ATGAGGATAAAAGC 831
| | | ||| || ||| ||||||||||| | ||||||||||||||
Sbjct 792 G---A------------A--GAACAA-AAA--GGAGAACTGAT-CGATGAGGATAAAAGC 830
Query 832 AAAGAGCAAATAGAGGAGCCgaaagaaccagagaacaccgaagaaaacaacagtgaagaa 891
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 ACAGAGCAAATAGAGGAGCCGAAAGAACCAGAGAACATCGAAGAAAACAACAGTGAAGAA 890
Query 892 gaggaagaagttaaaaagaagGT-TGATGATGAGGAAAAGAGCGAGACAGTTGCTACTAC 950
||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 891 GAGGAAGAAGTCAAAAAGAAA-TCTGATGATGAGGAAAATAGCGAGACAGTTGCTACTAC 949
Query 951 TACAGATATGCATGAAGCTGTGAATGTCGGAGAAAGTAAGGAAGGGGATCAGgaagaagc 1010
|||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 950 TACAGATATGAATGAAGCTGTGAATGTCGAAGAAAGTAAGGAAGAGGAAAAGGAAGAAGC 1009
Query 1011 agaagttaaagaagaggagagcgaaagcagcaaagcgaaagaagaaaCAACCGAAACAAA 1070
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1010 AGAAGTTAAAGAAGAGGAGGGCGAAAGCAGCGCCGCGAAAGAAGAAACAACCGAAACAAT 1069
Query 1071 GGCTCAAGTAGAAGAATTACCAGAGGAAGGAACAAAGAAGGAAGTGGTGCAAGGGAAGAA 1130
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1070 GGCTCAAGTAGAAGAATTACCAGAGGAAGGAACAAAGAATGAAGTGGTGCAAGGGAAGAA 1129
Query 1131 GGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAAGAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAAGAA 1189
Query 1191 GAACAAG 1197
|||||||
Sbjct 1190 GAACAAG 1196
> AT5G10680.1 | Symbols: | calmodulin-binding protein-related
| chr5:3373584-3374309 FORWARD LENGTH=726
Length=726
Score = 342 bits (185), Expect = 4e-93
Identities = 221/239 (92%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 907 aagaagGTTGATGATGAGGAAAAGAGCGAGACAGTTGCTACTACTACAGATATGCATGAA 966
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 484 AAGAAAGTTGATGATGAGGAAAATAGCGAGACAGTTGCTACTACTACGGATATGAATGAA 543
Query 967 GCTGTGAATGTCGGAGAAAGTAAGGAAGGGGATCAGgaagaagcagaagttaaagaagag 1026
||||||||| ||| | ||||||| ||| ||| ||||||||||||||||||||||| ||
Sbjct 544 GCTGTGAATTTCGAAAAAAGTAAACAAGAGGAACAGGAAGAAGCAGAAGTTAAAGAGGAA 603
Query 1027 gagagcgaaagcagcaaagcgaaagaagaaaCAACCGAAACAAAGGCTCAAGTAGAAGAA 1086
|||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 604 GAGAGCGAAAGCAGCAGAGTGAAAGAAGAAACAGCCGAAACAAAGGCTCAAATAGAAGAA 663
Query 1087 TTACCAGAGGAAGGAACAAAGAAGGAAGTGGTGCAAGGGAAGAAGGAATCTCCAACAGC 1145
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 664 TTACCAGAGGAAGGAACAAAGAAGGAAGGGGTGCAAGGGAAGAAGGAATCTCCAACAGC 722
> AT5G24880.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: calmodulin-binding protein-related (TAIR:AT5G10660.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:8552743-8554074 FORWARD LENGTH=1332
Length=1332
Score = 241 bits (130), Expect = 2e-62
Identities = 173/193 (90%), Gaps = 5/193 (3%)
Strand=Plus/Plus
Query 1069 AAGGCTCAAGTAGAAGAATTACCAGAGGAAGGAACA-AAGAAGGAAGTGGTGCAAGGGAA 1127
|||| | ||| |||||||| | |||| | |||| | ||||||||||| ||| |||||||
Sbjct 1144 AAGGTTAAAGAAGAAGAATCAGCAGA-G--GGAA-AGAAGAAGGAAGTAGTGAAAGGGAA 1199
Query 1128 GAAGGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAA 1187
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 GAAGGAATCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACCCGAG 1259
Query 1188 GAAGAACAAGGTCTTGGCTCTTGCTGGAGCCTTTCAAACTGTTATTGACTATGAAACTGC 1247
||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1260 GAAGAACAAAGTTTTGGCTCTTGCTGGAGCTTTTCAAACCGTTATTGACTATGAAACTGC 1319
Query 1248 TGCATCTAAGTGA 1260
|||||||||||||
Sbjct 1320 TGCATCTAAGTGA 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5