BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940536
Length=2581
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | c... 2244 0.0
AT5G10680.1 | Symbols: | calmodulin-binding protein-related | ... 905 0.0
> AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 |
chr5:3385901-3390686 FORWARD LENGTH=3291
Length=3291
Score = 2244 bits (1215), Expect = 0.0
Identities = 1365/1436 (95%), Gaps = 16/1436 (1%)
Strand=Plus/Plus
Query 485 GAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGGAGATTGATCGAGAAGCTGAGTGAGAG 544
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 905 GAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGGCGATTGATGGAGAAGCTGAGTGAGAG 964
Query 545 TTTGAAGACTATGGAAAGTCAGTCAGCACCGGTCCAAGAGCTAACTCAGAATCTTAAGAA 604
|||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 965 TTTGAAAACTATGGAGAGTCAGTCAGCACCGGTCCAAGAGCTTACTCAGAATCTTAAGAG 1024
Query 605 AGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTAATGGGCCATCAGGA 664
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1025 AGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTATGGGCCATCAGGA 1084
Query 665 TATAGATTTACGTTACTTGTTCATCTACAACAAGTATCCTAGTTTGCGGGAACAGGACAT 724
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1085 TAAAGATTTACGCTACTTGTTCATCTACAACAAGTATCCTAGTTTACGGGAACAGGACAT 1144
Query 725 TTTGGGAAAAACAGACGTTGAGATATTCCACGGAGGTGGCA-TTAAAGAATATCAAGATT 783
|||||||||||||||||| ||||||||||| |||||||| | ||||||||| | ||||||
Sbjct 1145 TTTGGGAAAAACAGACGTGGAGATATTCCATGGAGGTGG-AGTTAAAGAATCTGAAGATT 1203
Query 784 TCAAGAGAGAAGTTCTTGAGAAAGGAAAAGCTTCAAAGAGAGAGATCACATTTACGACAG 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1204 TCAAGAGAGAAGTTCTTGAGAAAGGAAAAGCTTCAAAGAGAGAGATCACATTTACTACAG 1263
Query 844 ATTTATTCGGATCAAAGACGTTTTTGGTATATGTTGAGCCTGTTTACAACAAAGCTGGCG 903
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1264 ATTTATTTGGATCAAAGACGTTTTTGATATATGTTGAGCCTGTTTACAACAAAGCTGGCG 1323
Query 904 AGAAAATCGGTATAAACTACATGGGAATGGAAGTAACTGAACAGGTAGAT-AAAAGGGAG 962
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1324 AGAAAATCGGTATAAACTACATGGGAATGGAAGTAACTGATCAGGTAG-TGAAAAGGGAG 1382
Query 963 AAAATGGCGAAACTTAGAGAAGATAACGCAGTGAGAAAGGCGATGGAATCAGAACTGAAC 1022
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1383 AAAATGGCGAAACTTAGAGAAGATAACGCTGTGAGAAAGGCGATGGAATCAGAACTGAAC 1442
Query 1023 AAGACCATCCACATTACAGAGGAGACAATGAGAGCGAAGCAAATGCTAGCGACAATGTCT 1082
||||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1443 AAGACTATTCACATTACAGAGGAGACAATGAGAGCAAAGCAGATGCTAGCGACGATGTCT 1502
Query 1083 CATGAGATAAGATCACCATTATCCGGAGTAGTGGGAATGGCTGAGATACTTTCAACTACA 1142
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1503 CATGAGATAAGGTCACCATTGTCAGGAGTAGTGGGAATGGCTGAGATACTTTCAACTACA 1562
Query 1143 AAACTGGATAAAGAGCAAAGACAGTTGTTGAATGTCATGATCTCTTCTGGGGATTTGGTG 1202
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1563 AAACTGGATAAAGAGCAAAGACAGTTGTTGAATGTCATGATCTCTTCTGGTGATTTGGTG 1622
Query 1203 CTTCAGCTAATCAACGACATTCTTGATATTTCCAAGGTTGAATCAGGTGTGATGAAATTA 1262
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1623 CTTCAGCTAATCAACGACATTCTTGATCTCTCCAAGGTTGAATCAGGTGTGATGAGATTA 1682
Query 1263 GAAGCTACAAAGTTTCGACCAAGAGAAGTGGTCAAGCATGTGCTTCAGACAGCTGCAGCA 1322
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1683 GAAGCTACAAAGTTTCGACCAAGAGAAGTAGTGAAGCATGTGCTACAGACAGCTGCAGCA 1742
Query 1323 TCGCTGAAGAAATCTTTGACATTAGAAGGAAACATTGCAGATGATGTTCCTATTGAGGTA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TCGCTGAAGAAATCTTTGACATTAGAAGGAAACATTGCAGATGATGTTCCTATTGAGGTA 1802
Query 1383 GTTGGAGATGTTCTAAGGATTCGGCAGATCCTCACCAATTTGATAAGCAATGCTATCAAA 1442
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1803 GTTGGAGATGTTCTAAGGATTAGGCAGATCCTCACCAATTTGATAAGCAATGCTATCAAG 1862
Query 1443 TTCACACATGAAGGAAATGTAGGAATCAAACTCCAAGTGATATCAGAACCATCCTTTGCG 1502
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1863 TTTACACATGAAGGAAATGTAGGAATCAAACTCCAAGTGATATCAGAACCATCCTTTGTG 1922
Query 1503 AGGGATAACGCATTGAACGCAGACACCGAGGAACACGAACAAAACGGTTTGACCGAGACT 1562
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 CGGGATAACGCATTGAACGCAGACACCGAGGAACACGAACAAAACGGTTTGACCGAGACT 1982
Query 1563 TCAGTTTGGATCTGCTGTGATGTTTGGGACACTGGAATTGGAATCCCAGGCAAGCAAGCA 1622
||||||||||| |||||||| || ||||||||||||||||||||||||| || || |
Sbjct 1983 TCAGTTTGGATTTGCTGTGACGTATGGGACACTGGAATTGGAATCCCAG--AA--AA-C- 2036
Query 1623 AAAAACGCTATTCCATGTTTGTTCAAGAAGTACATGCAAGCAAGCGCTGATCATGCCCGC 1682
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ------GCTCTTCCATGTTTGTTCAAGAAGTACATGCAAGCAAGCGCTGATCATGCCCGA 2090
Query 1683 AAATACGGTGGAACTGGTCTCGGACTTGCCATTTGTAAACAGCTGGTTGAGTTAATGGGA 1742
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2091 AAATACGGTGGGACTGGTCTCGGACTTGCTATTTGTAAACAGCTGGTTGAGTTAATGGGA 2150
Query 1743 GGTCAACTCACTGTGACAAGCCGGGTGAACGAAGGTTCAACGTTCACATTTATATTACCC 1802
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2151 GGCCAACTCACTGTGACAAGCCGGGTGAGCGAAGGTTCAACGTTCACATTTATATTACCC 2210
Query 1803 TACAAAGTTGGAACATCAGATGATTATTCAGATGATCAAGATGAGTTCTCTGACATGGCG 1862
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2211 TACAAAGTTGGAAGATCAGATGATTATTCAGATGATCAAGATGAGTTCTCTGATATGGCG 2270
Query 1863 GATCATCACTCCAAACCAGACGATACAGCTGAGGGATATTTCCAGTTTAAACCGCT 1918
||||| || || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2271 GATCAACAATCTGAACCAGACGATACAGCTGAAGGATATTTCCAGTTTAAACCGCT 2326
Score = 702 bits (380), Expect = 0.0
Identities = 447/479 (93%), Gaps = 5/479 (1%)
Strand=Plus/Plus
Query 1918 TGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAAG 1977
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 391 TGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTTTTGTCTTCGATGTGGCCCGAAG 450
Query 1978 ATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAGACA 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 ATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAGACA 510
Query 2038 CATTGAAAGAAGTGACGATTGAAGAGAAACTAACCATTGCGGATTTGACACGCTTACCAG 2097
| ||||||||||| || || || || | | |||||||||||| ||||||| ||||||
Sbjct 511 CGTTGAAAGAAGTTACTATCGA-GACA--CGGACCATTGCGGATATGACACGGTTACCA- 566
Query 2098 AAC-TATTGAATTCGACTCCTCAAGGCTCCTCTCAACTAACCAACCTTATGAAACAATGG 2156
||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 567 AACCTATTGAATTCGACTCATCAAGGCTCCTCTCAACTAACCAACCTTGTGAAACAATGG 626
Query 2157 GAGTATATGCAACACAACGCGGTTCGGCTATTAAGAGAAGAGCTTAAGAATCTCAATAGA 2216
|||||||||||| |||||||||||||||| |||| ||||||||| || |||||| |||||
Sbjct 627 GAGTATATGCAAGACAACGCGGTTCGGCTGTTAAAAGAAGAGCTAAAAAATCTCGATAGA 686
Query 2217 CAGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAAGTTTGAGAGC 2276
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 687 CAGAGAGAAGAAGCCGAGGCTAAAGAGTTGAAGATCATTGAGGAGTATAAGTTTGAGAGC 746
Query 2277 AACGAGCCTGAGAATGTTTCAGTTTTGGATGAGACGAGTGATTGGTTCCGCGGGTTTAGG 2336
|||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||
Sbjct 747 AACGAGCCTGAGAATGTTCCGGTTTTGGATGAGACGAGTGATTTGTTCCGCAGGTTTAGG 806
Query 2337 CAGAAGAAACGAGATGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA 2395
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CAGAAAAAACGAGATGCCTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA 865
Score = 634 bits (343), Expect = 1e-180
Identities = 409/440 (93%), Gaps = 7/440 (2%)
Strand=Plus/Plus
Query 19 AAATGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCAATGTGGCCCG 78
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 388 AAATGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTTTTGTCTTCGATGTGGCCCG 447
Query 79 AAGATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAG 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAGATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAG 507
Query 139 ACACGTTGACAGAAGTGACAATTGAAGAGAAACCGACCATTGCGGATTTGACACGGTTAC 198
||||||||| |||||| || || || || | | ||||||||||||| ||||||||||||
Sbjct 508 ACACGTTGAAAGAAGTTACTATCGA-GACA--CGGACCATTGCGGATATGACACGGTTAC 564
Query 199 CAGAAC-TAATGAATTCGACTCAACAAGGCTCCTCTCAACTAACCAACCTTGTGAAACAA 257
|| ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 565 CA-AACCTATTGAATTCGACTCATCAAGGCTCCTCTCAACTAACCAACCTTGTGAAACAA 623
Query 258 TGGGAGTATATGCAAGACAACGCGGTTCGGCTACTAAGAGAAGAGCTTAAGAACCTCAAT 317
|||||||||||||||||||||||||||||||| ||| ||||||||| || || ||| ||
Sbjct 624 TGGGAGTATATGCAAGACAACGCGGTTCGGCTGTTAAAAGAAGAGCTAAAAAATCTCGAT 683
Query 318 AGACAGAGAGAAGAAGCTGAGGC-ACAAGAGTTGAAGATTATTGAGGAGTATAAGTTTGA 376
||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 684 AGACAGAGAGAAGAAGCCGAGGCTA-AAGAGTTGAAGATCATTGAGGAGTATAAGTTTGA 742
Query 377 GAGCAACGAGCCTGAGAATGTTCCGGTTTTGGATGAGACGAGTGATTCATTCCGCAGGTT 436
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 743 GAGCAACGAGCCTGAGAATGTTCCGGTTTTGGATGAGACGAGTGATTTGTTCCGCAGGTT 802
Query 437 TAGGCATaaaaaaaGAGATG 456
|||||| |||||| ||||||
Sbjct 803 TAGGCAGAAAAAACGAGATG 822
> AT5G10680.1 | Symbols: | calmodulin-binding protein-related
| chr5:3373584-3374309 FORWARD LENGTH=726
Length=726
Score = 905 bits (490), Expect = 0.0
Identities = 573/614 (93%), Gaps = 2/614 (0%)
Strand=Plus/Plus
Query 1918 TGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAAG 1977
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TGGAGACTAATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAAA 61
Query 1978 ATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAGACA 2037
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 ATGTTGGACCTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCTATAGATTTAGACA 121
Query 2038 CATTGAAAGAAGTGACGATTGAAGAGAAACTAACCATTGCGGATTTGACACGCTTACCAG 2097
||||||||||| || || |||||||||| |||||||| ||||||||||| |||||||
Sbjct 122 TGTTGAAAGAAGTCACAATCGAAGAGAAACCGACCATTGCAGATTTGACACGGTTACCAG 181
Query 2098 AACTATTGAATTCGACTCCTCAAGGCTCCTCTCAACTAACCAACCTTATGAAACAATGGG 2157
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 182 AACTATTGAGTTTGACTCAGCAAGGCTCCTCTCAACTAACCAACCTCGTGAAACAATGGG 241
Query 2158 AGTATATGCAACACAACGCGGTTCGGCTATTAAGAGAAGAGCTTAAGAATCTCAATAGAC 2217
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 AGTATATGCAAAACAACGCGGTTCGGCTATTAAGAGAAGAGCTTAAGAATCTCGATAGAC 301
Query 2218 AGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAAGTTTGAGAGCA 2277
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 302 AGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAACTTTGAGAGCC 361
Query 2278 ACGAGCCTGAGAATGTTTCAGTTTTGGATGAGACGAGTGATTGGTTCCGCGGGTTTAGGC 2337
|| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 362 ACCAGCCTGAGTATGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAGGC 421
Query 2338 AGAAGAAACGAGATGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGATA 2397
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGAAGAGACGAGAAGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGATA 481
Query 2398 GCAAGAAAGTTGATGATGAGGAAAATAGCGACACAGTTGCTACTTCTACGGATATGAATG 2457
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 482 GCAAGAAAGTTGATGATGAGGAAAATAGCGAGACAGTTGCTACTACTACGGATATGAATG 541
Query 2458 AAGCTGTGAATGTT-gaaaaaagtaaggaagcggaacaggaagaagctgaagttaaagaa 2516
||||||||||| || ||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct 542 AAGCTGTGAAT-TTCGAAAAAAGTAAACAAGAGGAACAGGAAGAAGCAGAAGTTAAAGAG 600
Query 2517 gaggagagcgaaag 2530
|| |||||||||||
Sbjct 601 GAAGAGAGCGAAAG 614
Score = 608 bits (329), Expect = 8e-173
Identities = 391/422 (93%), Gaps = 0/422 (0%)
Strand=Plus/Plus
Query 21 ATGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCAATGTGGCCCGAA 80
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGACTAATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAA 60
Query 81 GATGTTGGAACTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCCGGAGATTTAGAC 140
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AATGTTGGACCTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCTATAGATTTAGAC 120
Query 141 ACGTTGACAGAAGTGACAATTGAAGAGAAACCGACCATTGCGGATTTGACACGGTTACCA 200
| ||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ATGTTGAAAGAAGTCACAATCGAAGAGAAACCGACCATTGCAGATTTGACACGGTTACCA 180
Query 201 GAACTAATGAATTCGACTCAACAAGGCTCCTCTCAACTAACCAACCTTGTGAAACAATGG 260
|||||| ||| || |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GAACTATTGAGTTTGACTCAGCAAGGCTCCTCTCAACTAACCAACCTCGTGAAACAATGG 240
Query 261 GAGTATATGCAAGACAACGCGGTTCGGCTACTAAGAGAAGAGCTTAAGAACCTCAATAGA 320
|||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 241 GAGTATATGCAAAACAACGCGGTTCGGCTATTAAGAGAAGAGCTTAAGAATCTCGATAGA 300
Query 321 CAGAGAGAAGAAGCTGAGGCACAAGAGTTGAAGATTATTGAGGAGTATAAGTTTGAGAGC 380
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 301 CAGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAACTTTGAGAGC 360
Query 381 AACGAGCCTGAGAATGTTCCGGTTTTGGATGAGACGAGTGATTCATTCCGCAGGTTTAGG 440
|| |||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 361 CACCAGCCTGAGTATGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAGG 420
Query 441 CA 442
||
Sbjct 421 CA 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128126372422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5