BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940537
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10690.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 2778 0.0
> AT5G10690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein / CBS domain-containing protein | chr5:3374393-3377451
REVERSE LENGTH=1912
Length=1912
Score = 2778 bits (1504), Expect = 0.0
Identities = 1691/1780 (95%), Gaps = 17/1780 (1%)
Strand=Plus/Plus
Query 1 AGCCTCCGGTTTCTTTGAAGATGTATCGGATTTCAGCTACTTCTAATCTTGT--C-CCT- 56
||| || ||| || ||||||||| ||||||||||||||| ||||| |||||| | |||
Sbjct 100 AGCTTCTGGTCTCCTTGAAGATGAATCGGATTTCAGCTATTTCTACTCTTGTCACTCCTC 159
Query 57 T---TC--CTTCCGTCGTCCTCCTTCGTTCCGACACGACGGTGTTATCCTCGCAGAGCTA 111
| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 160 TCCCTCTTCTTCCGTCGTGCTCCTTTGTTCCGACACGACGGTGTTATCCTCGCAGAGCTA 219
Query 112 CTCCTTACTCCAGGCGTATCAATCTCAAGCCTCTCACCTCTCGCATTGTTCTCCTCACGC 171
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 220 CTCCTTATTCCAGGCGAATCAATCTCAAGCCTCTCACTTCTCGCATTGTTCTCCTCACGC 279
Query 172 GCCGTCGTCAGCTTGGTCAGATCGTGGAGGAGGTGGAAGCAGCTAAGAAACGGTATGGGA 231
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 280 GCCGTCGTCAGCTTGGTCAGATCGTGGAGGAGGTAGAAGCCGCTAAGAAACGGTATGGGA 339
Query 232 GGCTTAACACAATTGTGATGAACTCAGTTCTAGAAGCTTGCGTTCACTGTGGAAATATCG 291
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 340 GGCTCAACACAATTGTGATGAACTCAGTTCTCGAAGCTTGCGTTCACTGTGGAAATATTG 399
Query 292 ATTTGGCTCTTCGGATGTTTCATGAGATGGCGGAACCTGGTGGGATTGGAGTCGACTCTA 351
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 400 ATTTGGCTCTTCGGATGTTCCATGAGATGGCGGAACCTGGTGGAATTGGAGTCGACTCTA 459
Query 352 TTAGTTACGCCACTATCTTGAAGGGATTGGGGAAGGCTCGGAGGATTGACGAAGCGTTCC 411
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 460 TTAGTTACGCTACTATCTTGAAGGGATTGGGTAAGGCTCGGAGGATTGATGAAGCGTTCC 519
Query 412 AAATGCTGGAGTCTATAGAGCATGGAACTGCTGCTGGGAATCCTAAGTTGTCATCATCTC 471
||||||||||| |||||||| |||||||||||||||||| ||| || |||||||||||||
Sbjct 520 AAATGCTGGAGACTATAGAGTATGGAACTGCTGCTGGGACTCCCAAATTGTCATCATCTC 579
Query 472 TTATCTATGGTCTGCTTGACGCTCTTATCAATGCTGGAGATTTACGTCGTGCCAATGGTC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTATCTATGGTCTGCTTGACGCTCTTATCAATGCTGGAGATTTACGTCGTGCCAATGGTC 639
Query 532 TGCTTGCACGATATGATATTTTGCTTCTAGATCATGGCACCCCGTCAGTTCTCATCTATA 591
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 640 TGCTTGCACGATATGATATTTTGCTTCTAGATCATGGTACTCCGTCAGTTCTTATCTATA 699
Query 592 ACTTGTTGATGAAGGGCTATGTCAACTCAGAATCTCCGCAAGCTGCAATAAATTTGCTGG 651
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ACTTGCTGATGAAGGGCTATGTCAACTCAGAATCTCCGCAAGCTGCAATAAATTTGCTGG 759
Query 652 ATGAAATGTTACGCCTTAGATTGGAGCCTGATAGGTTGACTTACAATACTTTGATCCATG 711
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 760 ATGAAATGTTACGCCTTAGATTGGAGCCAGATAGGTTGACCTACAATACTTTGATCCATG 819
Query 712 CCTGCATCAAGTGTGGCGA-TATGGATGTGGCTATGAAGTTTTTCAAGGAAATGAAGGAG 770
||||||| ||||||||||| | |||||| |||||||||||||||||| || |||||||||
Sbjct 820 CCTGCATTAAGTGTGGCGACT-TGGATGCGGCTATGAAGTTTTTCAATGATATGAAGGAG 878
Query 771 AAAGCAGAGGAATATTATGACGATTTTCTTCAGCCAGATGTTGTAACATACACCACTTTG 830
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 879 AAAGCAGAGGAATATTACGACGATTTTCTTCAGCCAGATGTTGTAACCTACACCACTTTG 938
Query 831 GTGAAGGGGTTTGGGGATGCAAAGGATCTGTTATCACTGCAGGAAATATTTTTGGAAATG 890
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 939 GTGAAGGGGTTTGGGGATGCAACGGATCTGTTATCACTGCAGGAAATTTTTTTGGAAATG 998
Query 891 AAATTGTGTGATAACGTGTTCATTGACCGAACTGCATTTACAGCAGTAGTTGATGCTATG 950
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 999 AAATTGTGTGAGAACGTGTTCATTGACCGAACTGCATTTACAGCAGTAGTTGATGCCATG 1058
Query 951 CTGAAGTGTGGTTCAACAAGCGGGGCCCTTTGTGTATTTGGTGAGATATTGAAGAGAAGT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CTGAAGTGTGGTTCAACAAGCGGGGCCCTTTGTGTATTTGGTGAGATATTGAAGAGAAGT 1118
Query 1011 GGAGCTAACGAAGTCTTGCGACCAAAGCCTCACTTGTACCTGTCTATGATGCGTGCTTTT 1070
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1119 GGAGCTAATGAAGTCTTGCGACCAAAGCCTCACTTGTACCTGTCTATGATGCGTGCGTTT 1178
Query 1071 GCTGTCCAAGGGGATTATGGAATGGTTAGAAATCTGTATCTTCGCTTATGGCCGGATTCT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GCTGTCCAAGGGGATTATGGAATGGTTAGAAATCTGTATCTTCGCTTATGGCCGGATTCT 1238
Query 1131 TCAGGATCAATCTCCAAGGCGGTTCAACAAGAAGCTGATAATCTCCTGATGGAAGCAGCT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TCAGGATCAATCTCCAAGGCGGTTCAACAAGAAGCTGATAATCTCCTGATGGAAGCAGCT 1298
Query 1191 CTCAATGCTGGCCAGCTCGATGAGGCCCTAGGGATTCTTTCAAGTATCGTTAGAAGGTGG 1250
||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1299 CTCAATGATGGCCAGCTCGATGAGGCCCTAGGGATTCTTTTAAGTATCGTGAGAAGGTGG 1358
Query 1251 AAGGCAATACCTTGGACGACTAGTGGAGGC-TG-CTG-T--CCGCCTAGAAGCATTGTTG 1305
||| |||||||||||||||||||||||||| || ||| | |||||||||| ||||||||
Sbjct 1359 AAGACAATACCTTGGACGACTAGTGGAGGCATGGCTGCTGTCCGCCTAGAAACATTGTTG 1418
Query 1306 GGGTTTTCCAA-TCTATATTGCGCCCGCATCTACTTAGTAAGGTGATACCAAGTGAACCA 1364
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1419 GGGTTTTCCAAGTCTATATTGCGTCCACATCTACTTAGTAAGGTGATACCAAGTGAACCA 1478
Query 1365 ATAGAAAACATTATGATTCGATTTGAAGCCACTCAGCCACTGCTAGGCACTCTGCAGTTG 1424
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1479 ATAGAAAGCATTATGATTCGATTTGAAGCCACTCGGCCACTGCTAGGCACTCTGCAGTTG 1538
Query 1425 AAGAATGTGGTCATGCGGTTTTTCAAGGAGCAAGTTGTACCAATTGTAGACGACTGGGGA 1484
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1539 AAGAATGTGGCCATGCGGTTTTTCAAGGAGCAAGTTGTACCAATTGTAGACGACAGGGGA 1598
Query 1485 AGCTGCATAGGCCTTTTGCATCGGGAGGATTGCAACAATCTTGATGCGCCATTGGTCTCA 1544
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1599 AGCTGCATAGGCCTTTTGCATCGGGAGGATTGCAATAACCTTGATGCGCCATTGGTCTCA 1658
Query 1545 ATGATGAGAAGCCCGCCCACATGTGTGAATACAACAACATCGATTGGTCGTGTCGTGGAT 1604
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1659 ATGATGAGAAGCCCGCCCACATGTGTGAGTACAACAACATCGATTGGTCGTGTGGTAGAT 1718
Query 1605 CTGGTTTTGGAAAAGAAACTTAAGATGGTTATAGTTGTTCATTGCGGAAATCTTAGTGGG 1664
|| |||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 1719 CTAGTTTTGGAAAAGAAGCTTAAGATGGTTATAGTTGTTCACTGCGGGAATTTTAGTGGG 1778
Query 1665 GGTGGTTATAGCTCAAAGGCAGTAGGAGCTTTTACAAGAGCACAATTGTATCGGCTATTT 1724
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 AGCGGTTATAGCTCAAAGGCAGTAGGAGCTTTTACAAGAGCACAATTGTATCGGCTATTT 1838
Query 1725 GAGCCAGAACAACAGCTGCTTTAGTAAATGTAAGTAATAT 1764
|| |||||||| |||||||||||| ||||||||||||||
Sbjct 1839 GAATCAGAACAAAAGCTGCTTTAGTGAATGTAAGTAATAT 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5