BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940540

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10695.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   359    8e-99


> AT5G10695.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G57123.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:3377663-3378221 FORWARD LENGTH=559
Length=559

 Score =  359 bits (194),  Expect = 8e-99
 Identities = 229/245 (93%), Gaps = 5/245 (2%)
 Strand=Plus/Plus

Query  5    agaagaagaagaagaagaagGGGATGTGTTTGGTGTTCGTGTGTGATAAGGACGAGAGGG  64
            ||||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct  135  AGAAG-AGAAGAAGAAGAA--GGATGTGTTTGGTGTTCGTGTGTGATCAGGACGAGAGGG  191

Query  65   TGATCGGAAGGTATGCAGCTCCTGGAGCGTGTCCCTACTGCGGCGGAGCGGTTCAAGTGG  124
            ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  192  TGATCGGAAGGTACGCAGCTCCTGGAGCGTGTCCGTACTGCGGAGGAGCGGTTCAAGTGG  251

Query  125  TTGACGTAAATAGCCAGTGGAGATTCTGCTTCGTCCCTCTCTCTAATAAATCCAAACGTC  184
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  252  TTGACGTAAATAGCCAGTGGAGATTCTGCTTCGTTCCTCTCTCTAATAAATCCAAACGTC  311

Query  185  GCCATATCTGTTCAACTTGCGGTAAACGACTCAACGTCCATGGCTGAAA-CAAACC-CCC  242
            | ||| ||||||| |||||||| |||||||||| ||||||||||||||| |||| | |||
Sbjct  312  GTCATCTCTGTTCCACTTGCGGCAAACGACTCATCGTCCATGGCTGAAAACAAAACTCCC  371

Query  243  ACCTC  247
            |||||
Sbjct  372  ACCTC  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5