BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940543
Length=2813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | c... 4420 0.0
AT5G10680.1 | Symbols: | calmodulin-binding protein-related | ... 702 0.0
> AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 |
chr5:3385901-3390686 FORWARD LENGTH=3291
Length=3291
Score = 4420 bits (2393), Expect = 0.0
Identities = 2678/2817 (95%), Gaps = 13/2817 (0%)
Strand=Plus/Plus
Query 2 ATGAAGAGAAACTTTGATAAATGGTCTGTGAAATGGAGACTGATCAGATTGAGGAAATGG 61
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAAGAGAAACCTTGATCAATGGTCTGTGAAATGGAGACTGATCAGATTGAGGAAATGG 417
Query 62 ATGTCGAAGTCTTGTCTTCCATGTGGCCCGAAAATGTTGGAACTGAAGCTGACAAACAGT 121
|||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ATGTCGAAGTTTTGTCTTCGATGTGGCCCGAAGATGTTGGAACTGAAGCTGACAAACAGT 477
Query 122 TCAACGTTGAGAAACCTGCTGGAGATTTAGACACGTTGAAAGAAGTGACAATTGAAGAGA 181
||||||| ||||||||||| |||||||||||||||||||||||||| || | | ||||
Sbjct 478 TCAACGTCGAGAAACCTGCCGGAGATTTAGACACGTTGAAAGAAGTTACTA-T--CGAGA 534
Query 182 AACCCACCATTGCGGATTTGACACGCTTACCAGAA-CTAATGAATTCGACTCAACAAGGC 240
|| |||||||||||| ||||||| |||||| || ||| ||||||||||||| ||||||
Sbjct 535 CACGGACCATTGCGGATATGACACGGTTACCA-AACCTATTGAATTCGACTCATCAAGGC 593
Query 241 TCGTCTCAGCTAACCAACCTTGTGAAACAATGGGAGTATATGCAAGACAACGCGGTTC-G 299
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 594 TCCTCTCAACTAACCAACCTTGTGAAACAATGGGAGTATATGCAAGACAACGCGGTTCGG 653
Query 300 CTTATTAAGAGAAGAGCTTAAGAATCTCAATAGACAGAGAGAAGAAGCTGAAGCAAAAGA 359
| | |||| ||||||||| || |||||| ||||||||||||||||||| || || |||||
Sbjct 654 C-TGTTAAAAGAAGAGCTAAAAAATCTCGATAGACAGAGAGAAGAAGCCGAGGCTAAAGA 712
Query 360 GTTGAAGATCATTGAGGAGTATAAGTTTGAGAGCAACGAGCCTGAGAATGTTCCGGTTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTTGAAGATCATTGAGGAGTATAAGTTTGAGAGCAACGAGCCTGAGAATGTTCCGGTTTT 772
Query 420 GGATGAGACGAGTGATTTGTTCCGCAGGTTTAGGCAGAAGAAACGAGATGCGTTGGTCGA 479
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 773 GGATGAGACGAGTGATTTGTTCCGCAGGTTTAGGCAGAAAAAACGAGATGCCTTGGTCGA 832
Query 480 TAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACGGTTGCATATTGGAAACAGAAGGC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 833 TAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACTGTTGCATATTGGAAACAGAAGGC 892
Query 540 GTTGAATCTGGAGAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGGAGATTGGTCGAGAA 599
||||| ||| |||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 893 GTTGAGTCTTGAGAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGGCGATTGATGGAGAA 952
Query 600 GCTGAGTGAGAGTTTGAAGACTATGGAGAGTCAGTCAGCACCGGTCCAAGAGCTAACTCA 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 953 GCTGAGTGAGAGTTTGAAAACTATGGAGAGTCAGTCAGCACCGGTCCAAGAGCTTACTCA 1012
Query 660 GAATCTTGAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTAT 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GAATCTTAAGAGAGCTGAAGGTTTCTTGCATTTCATACTTCAGAATGCACCTATTGTTAT 1072
Query 720 GGGTCATCAGGATAAAGATTTACGCTACTTGTTTATCTACAACAAGTATCCTAGTTTGCG 779
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1073 GGGCCATCAGGATAAAGATTTACGCTACTTGTTCATCTACAACAAGTATCCTAGTTTACG 1132
Query 780 GGAGCAGGACATTTTGGGAAAAACAGACGTTGAGATATTCCACGGAGGTGGCGTTAAAGA 839
||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1133 GGAACAGGACATTTTGGGAAAAACAGACGTGGAGATATTCCATGGAGGTGGAGTTAAAGA 1192
Query 840 ATCTCAAGATTTCAAGAGAGAAGTTCTTGAGAAAGGAAAAGCTTCAAAGAGAGAGATCAC 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATCTGAAGATTTCAAGAGAGAAGTTCTTGAGAAAGGAAAAGCTTCAAAGAGAGAGATCAC 1252
Query 900 ATTTACGACAGATTTATTCGGATCAAAGACGTTTTTGATATATGTTGAGCCTGTTTACAA 959
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATTTACTACAGATTTATTTGGATCAAAGACGTTTTTGATATATGTTGAGCCTGTTTACAA 1312
Query 960 CAAAGCTGGCGAGAAAATCGGTATAAACTACATGGGAATGGAAGTAACTGAACAGGTAGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1313 CAAAGCTGGCGAGAAAATCGGTATAAACTACATGGGAATGGAAGTAACTGATCAGGTAG- 1371
Query 1020 T-AAAAGGGAGAAAATGGCGAAACTAAGAGAAGATAACGCAGTGAGAAAGGCGATGGAAT 1078
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1372 TGAAAAGGGAGAAAATGGCGAAACTTAGAGAAGATAACGCTGTGAGAAAGGCGATGGAAT 1431
Query 1079 CAGAACTGAACAAGACCATCCACATTACAGAGGAGACAATGAGAGCGAAGCAAATGCTAG 1138
|||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1432 CAGAACTGAACAAGACTATTCACATTACAGAGGAGACAATGAGAGCAAAGCAGATGCTAG 1491
Query 1139 CGACGATGTCTCATGAGATAAGATCACCATTATCCGGAGTAGTGGGAATGGCTGAGATTC 1198
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
Sbjct 1492 CGACGATGTCTCATGAGATAAGGTCACCATTGTCAGGAGTAGTGGGAATGGCTGAGATAC 1551
Query 1199 TTTCAACTACAAGACTGGATAAAGAGCAGAGACAGTTGTTGAATGTCATGATCTCTTCTG 1258
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1552 TTTCAACTACAAAACTGGATAAAGAGCAAAGACAGTTGTTGAATGTCATGATCTCTTCTG 1611
Query 1259 GGGATTTGGTGCTTCAGCTAATCAACGACATTCTTGATCTTTCCAAGGTTGAATCAGGTG 1318
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1612 GTGATTTGGTGCTTCAGCTAATCAACGACATTCTTGATCTCTCCAAGGTTGAATCAGGTG 1671
Query 1319 TGATGAAATTAGAAGCTACAAAGTTTCGACCAAGAGAAGTGGTCAAGCATGTGCTTCAGA 1378
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1672 TGATGAGATTAGAAGCTACAAAGTTTCGACCAAGAGAAGTAGTGAAGCATGTGCTACAGA 1731
Query 1379 CAGCTGCAGCATCGCTGAAGAAATCTTTGACATTAGAAGGAAACATTGCAGATGATGTTC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CAGCTGCAGCATCGCTGAAGAAATCTTTGACATTAGAAGGAAACATTGCAGATGATGTTC 1791
Query 1439 CTATTGAGGTAGTTGGAGATGTTCTAAGGATTCGGCAGATCCTCACCAATTTGATAAGCA 1498
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1792 CTATTGAGGTAGTTGGAGATGTTCTAAGGATTAGGCAGATCCTCACCAATTTGATAAGCA 1851
Query 1499 ATGCTATCAAGTTTACACATGAAGGAAATGTTGGAATCAAACTCCAAGTGATATCAGAAC 1558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1852 ATGCTATCAAGTTTACACATGAAGGAAATGTAGGAATCAAACTCCAAGTGATATCAGAAC 1911
Query 1559 CATCCTTTGCGCGGGATAACACATTGACCGCAGACACCGAGGAACAAGAACAAAACGGTT 1618
||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1912 CATCCTTTGTGCGGGATAACGCATTGAACGCAGACACCGAGGAACACGAACAAAACGGTT 1971
Query 1619 TGACCGAGACTTCAGTTTGGATCTGCTGTGATGTTTGGGACACTGGAATTGGAATCCCAG 1678
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1972 TGACCGAGACTTCAGTTTGGATTTGCTGTGACGTATGGGACACTGGAATTGGAATCCCAG 2031
Query 1679 AAAACGCTATTCCATGTTTGTTCAAGAAGTACATGCAAGCAAGCGCTGATCATGCCCGCA 1738
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2032 AAAACGCTCTTCCATGTTTGTTCAAGAAGTACATGCAAGCAAGCGCTGATCATGCCCGAA 2091
Query 1739 AATACGGTGGAACTGGTCTCGGACTTGCCATTTGTAAACAGCTGGTTGAGTTAATGGGAG 1798
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2092 AATACGGTGGGACTGGTCTCGGACTTGCTATTTGTAAACAGCTGGTTGAGTTAATGGGAG 2151
Query 1799 GTCAACTCACTGTGACAAGCCGTGTGAACGAAGGTTCAACGTTCACATTTATATTACCCT 1858
| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 2152 GCCAACTCACTGTGACAAGCCGGGTGAGCGAAGGTTCAACGTTCACATTTATATTACCCT 2211
Query 1859 ACAAAGTTGGAACATCAGATGATTATTCAGATGATCAAGATGAGTTCTCTGACATGGCGG 1918
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2212 ACAAAGTTGGAAGATCAGATGATTATTCAGATGATCAAGATGAGTTCTCTGATATGGCGG 2271
Query 1919 ATCATCAATCCGAACCAGACGATACAACTGAAGGATATTTCCAGTTTAAACCGCTTCT-A 1977
|||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 2272 ATCAACAATCTGAACCAGACGATACAGCTGAAGGATATTTCCAGTTTAAACCGCT-CTTA 2330
Query 1978 GGATCTATATATTCTAATGGCGGACCAGGCATCGGCAATGACTTCTTACCTCATAAAGTC 2037
||||| |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 2331 GGATCGATATATTCGAATGGCGGACCGGGGATCAGCAATGACTTCTTACCTCATAAAGTC 2390
Query 2038 ATGCTTACTAGTCCTATTAAGCTCATGAATAGTTTTGTCGCTGATCCTTCTAACAACACT 2097
|||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||
Sbjct 2391 ATGCTTACTAGTCCTATTAAGCTCATCAATGGTTTTGTCGCTGATCCCTCTAATAACACT 2450
Query 2098 GGACAGAGCGAGATGCTTCAGCTTGAAAACGGTGGTTACGTGGATGAATCTAAACTCGAA 2157
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2451 GGACAGAGCGAGATGCTACAGCTTGAAAACGGTGGTTACATGGATGAATCTAAACTCGAA 2510
Query 2158 ACCAGTTCTGGTCATTGCCCTGAATCAGCTCACCAATATGAGAATGGAAATGGTCGATGT 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 ACCAGTTCTGGTCATTGCCCTGAATCAGCTCACCAATATGAGAATGGAAATGGTCGATGT 2570
Query 2218 TTCTCCAAGGAATCTGAATCTTGTAGCAGTTCACAAGCTAGCTCAGAAGGTGGAACCTTA 2277
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 TTCTCTAAGGAATCTGAATCTTGTAGCAGTTCACAAGCTAGCTCAGAAGGTGGAACCTTA 2630
Query 2278 GAAATGGAGTCGGAGCTTACAGTTTCATCTCATAGGGAAGAGGAAAAAGCCGAGACAGAT 2337
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2631 GAAATGGAGTCAGAGCTCACAGTTTCATCTCATAGGGAAGAGGAAAAAGCCGAGACAGAA 2690
Query 2338 CTAAAAGAAACATCAAAGCCAAAGATTTTGCTTGTGGAAGATAATAAGATCAATATCATG 2397
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2691 GTAAAAGAAACATCAAAGCCAAAGATTTTGCTTGTGGAAGATAATAAGATCAACATCATG 2750
Query 2398 GTTGCAAAGTCGATGATGAAGCAGTTAGGCCATACCATGGATATTGCTAATAATGGAGTT 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 GTTGCAAAGTCGATGATGAAGCAGTTAGGCCATACCATGGATATTGCTAATAATGGAGTT 2810
Query 2458 GAAGCCATAACCGCTATAAATCA-CTCTAGTTACGATCTGGTACTCATGGATGTGTGCAT 2516
|||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 2811 GAAGCCATAACCGCGATTAAT-AGCTCTAGCTACGATCTGGTACTCATGGATGTGTGCAT 2869
Query 2517 GCCAGTTCTGGATGGTTTAAAAGCTACAAGACTGATCCGTTCATATGAAGAAACTGGGAA 2576
||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2870 GCCGGTGCTCGATGGTTTAAAAGCTACAAGACTGATCCGTTCGTATGAAGAAACTGGGAA 2929
Query 2577 CTGGAATGCTGCAATAGAAGCCGGCGTAGATATAAAGACATTGGAGAATGAGCAAGTTTG 2636
|||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||
Sbjct 2930 CTGGAATGCTGCAATAGAAGCCGGAGTAGATATATCGACATCGGAGAATGAACAAGTTTG 2989
Query 2637 TGTGCGTTCCACAAACCGGCTGCCTATAATCGCGATGACAGCAAATACGTTAGCAGAGAG 2696
| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2990 TATGCGTCCCACAAACCGGCTGCCTATAATCGCGATGACGGCAAATACTTTAGCAGAGAG 3049
Query 2697 TTCAGAAGAATGTTATGCAAATGGTATGGACTCGTTTATTTCGAAACCTGTAACGTTGCA 2756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3050 TTCAGAAGAATGTTATGCAAATGGTATGGACTCGTTTATTTCGAAACCTGTAACGTTGCA 3109
Query 2757 AAAACTGAGAGAGTGTTTACAACAGTATTTGCATTGACATTTCAGAGTTTGGTGTTT 2813
|||||||||||||||||| |||||||||||||| ||| |||||||| ||| ||||||
Sbjct 3110 AAAACTGAGAGAGTGTTTGCAACAGTATTTGCACTGAGATTTCAGATTTTTGTGTTT 3166
> AT5G10680.1 | Symbols: | calmodulin-binding protein-related
| chr5:3373584-3374309 FORWARD LENGTH=726
Length=726
Score = 702 bits (380), Expect = 0.0
Identities = 447/480 (93%), Gaps = 2/480 (0%)
Strand=Plus/Plus
Query 34 ATGGAGACTGATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCCATGTGGCCCGAA 93
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGACTAATCAGATTGAGGAAATGGATGTCGAAGTCTTGTCTTCGATGTGGCCCGAA 60
Query 94 AATGTTGGAACTGAAGCTGACAAACAGTTCAACGTTGAGAAACCTGCTGGAGATTTAGAC 153
||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 61 AATGTTGGACCTGAAGCTGACAAACAGTTCAACGTCGAGAAACCTGCTATAGATTTAGAC 120
Query 154 ACGTTGAAAGAAGTGACAATTGAAGAGAAACCCACCATTGCGGATTTGACACGCTTACCA 213
| |||||||||||| ||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 121 ATGTTGAAAGAAGTCACAATCGAAGAGAAACCGACCATTGCAGATTTGACACGGTTACCA 180
Query 214 GAACTAATGAATTCGACTCAACAAGGCTCGTCTCAGCTAACCAACCTTGTGAAACAATGG 273
|||||| ||| || |||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct 181 GAACTATTGAGTTTGACTCAGCAAGGCTCCTCTCAACTAACCAACCTCGTGAAACAATGG 240
Query 274 GAGTATATGCAAGACAACGCGGTTC-GCTTATTAAGAGAAGAGCTTAAGAATCTCAATAG 332
|||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 241 GAGTATATGCAAAACAACGCGGTTCGGC-TATTAAGAGAAGAGCTTAAGAATCTCGATAG 299
Query 333 ACAGAGAGAAGAAGCTGAAGCAAAAGAGTTGAAGATCATTGAGGAGTATAAGTTTGAGAG 392
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 ACAGAGAGAAGAAGCTGAGGCAAAAGAGTTGAAGATCATTGAGGAGTATAACTTTGAGAG 359
Query 393 CAACGAGCCTGAGAATGTTCCGGTTTTGGATGAGACGAGTGATTTGTTCCGCAGGTTTAG 452
| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CCACCAGCCTGAGTATGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAG 419
Query 453 GCAGAAGAAACGAGATGCGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA 512
|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAGAAGAGACGAGAAGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139765103198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5