BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940544
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1561 0.0
> AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:3390614-3393178 REVERSE LENGTH=1303
Length=1303
Score = 1561 bits (845), Expect = 0.0
Identities = 884/903 (98%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 1 TCTCCTGCTCCGATTCGAAAATGAGGACAATCGTCTCGCGTTTGATTCGTTA-CAAATCG 59
||| || ||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 212 TCTTCTTCTCCGATTCGAAAATGAGGACAATCGTTTCGCGTTTGATTCGTTATC-AATCG 270
Query 60 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 330
Query 120 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 390
Query 180 CCTCCTACTGAGAAGCTGCTTGTTTTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 239
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 391 CCTCCTACTGAGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 450
Query 240 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTTGCAGGTCAGGTAAGTCGTCT 299
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 451 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGTCAGGTAGGTCGTCT 510
Query 300 TTACAAGAGTCCTGGGCTTCCAAAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 359
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 511 TTACAAGAGTCCTGGGCCTCCAGAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 570
Query 360 TTATTAAAAGATGCTCTTGATGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 419
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTATTGAAAGATGCTCTTGAGGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 630
Query 420 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 690
Query 480 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAC 750
Query 540 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 810
Query 600 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 870
Query 660 AGCATGAAGATCCCATTGGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 719
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AGCATGAAGATCCCGTTAGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 930
Query 720 AAACCTCTGAACCAGCTTCCGTTAGTCGGACCTTTATTCACACCTCCGGTGAATGTTGAA 779
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 931 AAACCTCTGAACCAGCTTCCATTAGTCGGACCTTTGTTCACACCTCCGGTGAATGTTGAA 990
Query 780 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACTGATCCAGTGTTCCCTCCCGGGATTGTG 839
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACAGATCCAGTGTTCCCTCCCGGGATTGTG 1050
Query 840 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 1110
Query 900 CTT 902
|||
Sbjct 1111 CTT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5