BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940546

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10745.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   320    3e-87


> AT5G10745.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G24980.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr5:3396475-3398063 FORWARD LENGTH=1391
Length=1391

 Score =  320 bits (173),  Expect = 3e-87
 Identities = 180/183 (98%), Gaps = 1/183 (1%)
 Strand=Plus/Plus

Query  15   TCTTTCATGGCGAAGGAGCAGCACTTACGACCTTGGTTTCTGGATCTAGTACCGGCTTTG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   TCTTTCATGGCGAAGGAGCAGCACTTACGACCTTGGTTTCTGGATCTAGTACCGGCTTTG  132

Query  75   GTTGTTTTCCTCGCCGCAGCTCATGTCATCGCCTTGGGTTACTGGATTTACAGATTGGCC  134
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  133  GTTGTTTTGCTCGCCGCAGCTCATGTCATCGCCTTGGGTTACTGGATTTACAGATTGGCC  192

Query  135  ACTGATCGTCGAGCTCAGAGTCAGAGAGGCAAATTTCACTGAAGAAACAT-CGAATAGGT  193
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  193  ACTGATCGTCGAGCTCAGAGTCAGAGAGGCAAATTCCACTGAAGAAACATTCGAATAGGT  252

Query  194  TCG  196
            |||
Sbjct  253  TCG  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5