BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940548
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10760.1 | Symbols: | Eukaryotic aspartyl protease family p... 1018 0.0
AT4G03800.1 | Symbols: | transposable element gene | chr4:1743... 84.2 2e-15
AT5G32580.1 | Symbols: | transposable element gene | chr5:1221... 78.7 9e-14
> AT5G10760.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:3400342-3402207 REVERSE LENGTH=1766
Length=1766
Score = 1018 bits (551), Expect = 0.0
Identities = 763/864 (88%), Gaps = 20/864 (2%)
Strand=Plus/Plus
Query 5 agagagagGGGTAACAATGAGCATAATGAGGAATTTCTTGAATATGATAATTCTTCTTTG 64
|||| || || ||| |||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 29 AGAGGGA-GGTTAA-AATGAGCATAATGAGGAATTTCTTGAGTATGATAATTATGCTTTG 86
Query 65 TGTATGTCTCAATTGGTGTTTTACTGAAGGAGCTGAGAAAAGAGAGAGTGGAAAGGTACT 124
||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 87 CGTATGTCTCAATTGGTGTTTTGCTGAAGGAGCTGAGAAAAGCGATAGTGGAAAGGTACT 146
Query 125 TGACTCTTACACCATTCAAGTCAGCTCTCTTTTTCCTTCATCATCATCTTGTGTCCCTTC 184
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 147 TGATTCTTACACCATTCAAGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTC 206
Query 185 TTCAAAAGTATCTAATACCAAGTCATCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 244
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 207 TTCAAAAGCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 266
Query 245 CCATCTTAGTAGCAACAAAGATGCGAGACTCGACCATGACGAAATCCTCAGACGTGATCA 304
|||| | ||||| | ||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 267 GCATC-T--TAGCAGC---GATGCGAGAGTCGACCATGACGAAATCATCAGACGCGATCA 320
Query 305 AGCACGCGTGGAGTCTATCCACTCGAAACTGTCAAAGAATATTGCAGATGAAGTCAGCAA 364
|||||| |||||||| ||| |||| ||| |||||||||||| ||| ||||||||||| |
Sbjct 321 AGCACGTGTGGAGTCCATCTACTCAAAATTGTCAAAGAATAGCGCAAATGAAGTCAGCGA 380
Query 365 AGCCAAGTCAACGGAGCTACCAGCCAAAAATGGAATCATACTCGGTTCACCAAACTACAT 424
||||||||||||||||||||| || |||| |||||||| |||||| ||| |||||||||
Sbjct 381 AGCCAAGTCAACGGAGCTACCGGCTAAAAGTGGAATCACACTCGGATCAGGAAACTACAT 440
Query 425 CGTAACAATCGGAATTGGGACACCGAAGCACGATATATCGCTAATCTTCGACACCGGAAG 484
||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 441 CGTAACAATCGGAATCGGGACACCGAAGCACGATCTATCGCTGGTCTTCGACACCGGAAG 500
Query 485 CGATTTGACATGGACTCAATGCGAGCCATGTCTTGGAAGTTGCTATTCACAAAAGGAACC 544
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 501 TGACCTGACATGGACTCAATGTGAGCCATGTCTAGGAAGTTGCTATTCACAAAAGGAACC 560
Query 545 AAAATTTAACCCTTCTTCATCTTCTTCTTACCACAACGTCTCATGCTCATCTCCAATGTG 604
|||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 561 AAAATTTAACCCTTCTTCGTCTTCTACTTACCAAAACGTCTCGTGCTCATCTCCAATGTG 620
Query 605 TGGAA-ACACCGCA-AGTTGCTCGGCTTCCAATTGCCTATACGGAATCCGTT-ATGGAGA 661
|| || || | | | ||||| ||||||||||| ||| ||||| | ||| ||| | || ||
Sbjct 621 TG-AAGACGCTG-AGAGTTGTTCGGCTTCCAACTGCGTATACAGTATC-GTTTACGGCGA 677
Query 662 TG-GATCAATTACCGTCGGATTCCTAGCCAAGGAGAAATTCACCTTAACGAACTCTGATG 720
| | || ||||| ||||| || || ||||||||||| ||| |||||||||||||||
Sbjct 678 TAAG-TCGTTTACCCAAGGATTTCTTGCAAAGGAGAAATTTACCCTAACGAACTCTGATG 736
Query 721 TCTTGGACGATGTTTACTTTGGTTGCGGTGAAAATAAC-AGAGGACTTTTCAACGGTGCT 779
| ||||| |||||||||||||||||||||||||| ||| | |||||||||| |||||| |
Sbjct 737 TTTTGGAGGATGTTTACTTTGGTTGCGGTGAAAACAACCA-AGGACTTTTCGACGGTGTT 795
Query 780 GCTGG-CATTCTCGGCCTTGGTCCTGGCAAATTCTCATTTCCGTCACAAACAACGACGAC 838
||||| | ||||||||||||| ||||||||| ||||| | ||| | |||||||| |||||
Sbjct 796 GCTGGGC-TTCTCGGCCTTGGCCCTGGCAAACTCTCACTACCGGCGCAAACAACAACGAC 854
Query 839 TTACAACAATATCTTCTCCTACTG 862
|||||||||||||||||||||||
Sbjct 855 CTACAACAATATCTTCTCCTACTG 878
> AT4G03800.1 | Symbols: | transposable element gene | chr4:1743791-1748332
REVERSE LENGTH=4542
Length=4542
Score = 84.2 bits (45), Expect = 2e-15
Identities = 56/61 (92%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 864 TGTGGATGTCGGATTCACACACTCAAGTATTT-TT-ATTAAGTGGGAAAGATTACTCTTG 921
|||||||||||||||||||||||||||||||| || ||| |||| ||||||||| |||||
Sbjct 1295 TGTGGATGTCGGATTCACACACTCAAGTATTTATTTATTTAGTGAGAAAGATTATTCTTG 1236
Query 922 A 922
|
Sbjct 1235 A 1235
> AT5G32580.1 | Symbols: | transposable element gene | chr5:12213984-12220094
FORWARD LENGTH=6111
Length=6111
Score = 78.7 bits (42), Expect = 9e-14
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 864 TGTGGATGTCGGATTCACACACTCAAGTATTT-TT-ATTAAGTGGGAAAGATTACTCTTG 921
|||||||||||||||||||||||||||||||| || ||| |||| ||| ||||| |||||
Sbjct 648 TGTGGATGTCGGATTCACACACTCAAGTATTTATTTATTTAGTGAGAAGGATTATTCTTG 589
Query 922 A 922
|
Sbjct 588 A 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5