BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940554

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10810.1 | Symbols: ATER, ER | enhancer of rudimentary prote...   566    6e-161


> AT5G10810.1 | Symbols: ATER, ER | enhancer of rudimentary protein, 
putative | chr5:3418666-3420635 REVERSE LENGTH=640
Length=640

 Score =  566 bits (306),  Expect = 6e-161
 Identities = 351/373 (94%), Gaps = 2/373 (1%)
 Strand=Plus/Plus

Query  1    GAAGTCA-AACTATCACTTGAAGATGGCTAATCACAACAGTAGTAGGCACACCATCATCT  59
            ||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct  58   GAAGTCACAA-TATCACTCGAAGATGGCTAATCACAACAGTAGTAGGCACACAATCATCT  116

Query  60   TGTTGCAAAATTCTCCCAGCAGAGCTACCAGGACTTTCATGGACTATGATTCTATAGGCC  119
            ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  117  TGTTGCAGAATTCTCCGAGCAGAGCTACGAGGACTTTCATGGACTATGACTCTATAGGCC  176

Query  120  AAGCTATGGATGGTATTTGCGGCATATACGAAAGGAAGTTGAAGGAAATTAACCCTTCTC  179
            ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct  177  AAGCTATGGATGGTATTTGCGGCTTATATGAAAGGAAGTTGAAGGAAATTAACCCTTCTC  236

Query  180  TCAGAAATATTAGCTATGACATTGCTGACCTTTACAATTTTATTGACGGTCTTGCTGACT  239
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  237  TCAGAAATATTAGCTATGACATTGCTGACCTTTACAATTTTATTGATGGTCTTGCTGACT  296

Query  240  TGAGCGCTTTGGTCTATGAACACTCGATCAGCGCATATCTGCCATACGACAGGCAATGGA  299
            ||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct  297  TGAGCGCTTTGGTCTATGACCACTCGATAAGTGCATATCTGCCATATGACAGGCAATGGA  356

Query  300  TTAAGCAGAAAGCATTTAACCATCTCAAGAGAATTGCCAATGGAAGCAGATGAAGAAAAA  359
            |||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| ||
Sbjct  357  TTAAGCAGAAGGCATTTCACCATCTGAAGAGAATTGCCAATGGAGGCAGATGAAGAAGAA  416

Query  360  ACATCATTTGAAA  372
             |||||| |||||
Sbjct  417  GCATCATATGAAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5