BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940557
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10840.1 | Symbols: | Endomembrane protein 70 protein famil... 3400 0.0
AT5G25100.2 | Symbols: | Endomembrane protein 70 protein famil... 2097 0.0
AT1G55130.1 | Symbols: TMN6, AtTMN6 | Endomembrane protein 70 p... 632 3e-180
> AT5G10840.1 | Symbols: | Endomembrane protein 70 protein family
| chr5:3424688-3427878 REVERSE LENGTH=2250
Length=2250
Score = 3400 bits (1841), Expect = 0.0
Identities = 1943/1993 (97%), Gaps = 3/1993 (0%)
Strand=Plus/Plus
Query 1 TCTTCCTT-GTGTGGAACAGCCAATGGCTATGGAGTTTCGGAGGAGCAGTAGAAGTATAT 59
|||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 60 TCTTCCTTCGTGTGGAACAGCC-ATGGCTATGGAGTTTCTGAGGAGCAGTAGAAGAATAT 118
Query 60 CGGAATCTTCTGGATCCGCGATCGCCTTGATTCTTCTGCTCTTCATCCATGGCGCTAACT 119
|||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||| |||
Sbjct 119 TGGAATCTTCTGGATGCGCGATCGCTTTGATTTTTCTGCTCTTCATCCATGGAGCTCACT 178
Query 120 CTTTCTATCTCCCAGGTGTTGCTCCTCAGGATTTCGAAAAGGGTGATGAGCTGAAGGTGA 179
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 CATTCTATCTCCCAGGTGTTGCTCCTCAGGATTTCGAGAAGGGTGATGAGCTGAAGGTGA 238
Query 180 AAGTGAATAAATTAACTTCCATAAAGACTCAGCTTCCATACTCCTATTACTCCCTTCCTT 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 AAGTGAATAAATTAACTTCCATAAAGACTCAGCTTCCATACTCGTATTACTCCCTTCCTT 298
Query 240 TTTGTCGTCCTAGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTG 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTGTCGCCCTAGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTG 358
Query 300 ACCGGATAGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTC 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACCGGATTGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTC 418
Query 360 TCTGCCGGGTCACTCTTGATGCAAAGACAGCAAAAGCTTTTAAAGAAAAGATCGATGATG 419
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 419 TCGGCCGGGTCACTCTTGATGCCAAGACAGCTAAAGCGTTTAAAGAAAAGATCGATGATG 478
Query 420 AGTACCGGGTCAACATGATCCTCGACAACCTTCCTCTAGTTGTTCCAATCGAAAGAGTCG 479
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 479 AGTACCGGGTCAACATGATCCTCGACAACCTTCCTCTGGTTGTTCCAATTGAAAGAGTCG 538
Query 480 ACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 ACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAGT 598
Query 540 ACGAGGGGAGCAAAGAGCAGAAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGAGGGGAGCAAAGAGCAGAAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCT 658
Query 600 ATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTCAAACCTTACA 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 ATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTTAAACCTTACA 718
Query 660 GTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACAACATGTGATC 719
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 719 GTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACGACTTGTGATC 778
Query 720 CTCATACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAAAAGAAGG 779
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTCACACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAAAAGAAGG 838
Query 780 AGATTATCTTCACATATGATGTCGATTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGAT 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATTATCTTCACATATGACGTCGATTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGAT 898
Query 840 GGGATACTTATCTTCTTATGAGTGATAACCAAATTCACTGGTTCTCTATCGTCAATTCTC 899
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 GGGATACTTATCTTCTGATGAGTGATAACCAAATCCACTGGTTCTCTATCGTCAATTCTC 958
Query 900 TGATGATCGTCCTATTCCTGTCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACC 959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGATGATCGTCCTATTCCTATCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACC 1018
Query 960 GTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGAT 1078
Query 1020 GGAAGCTTGTCCATGGTGATGTTTTCAGGCTTCCTACCAATTCTGATCTGCTCTGCGTTT 1079
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1079 GGAAGCTTGTCCATGGTGATGTTTTCAGACTTCCTACCAATTCTGATCTGCTCTGCGTCT 1138
Query 1080 ACGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGC 1139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGC 1198
Query 1140 TCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTTGCTCTGGG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTTGCTCTGGG 1258
Query 1200 TCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAA 1318
Query 1260 CAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTTTCAGCAA 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 CAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTGTCAGCAA 1378
Query 1320 TCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCCGGGGCTGTCCCCTTTG 1379
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1379 TCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCTGGGGCTGTCCCCTTTG 1438
Query 1380 GGACAATGTTTGCCTTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTG 1439
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAACAATGTTCGCCTTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTG 1498
Query 1440 GGGGTTACATCGGGTTCAAGAAGCCAGCAGTTGATGACCCAGTGAAAACCAACAAAATCC 1499
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1499 GGGGTTACATTGGGTTCAAGAAGCCAGCGGCTGATGACCCAGTGAAAACCAACAAAATCC 1558
Query 1500 CGAGGCAAATTCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAG 1559
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CGAGGCAAATCCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAG 1618
Query 1560 GAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGC 1678
Query 1620 TCAATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATCGTGA 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1679 TCAACCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATTGTGA 1738
Query 1680 CTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTT 1798
Query 1740 GGTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTACGCCA 1799
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1799 GGTGGTGGAGATCATACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTATGCCA 1858
Query 1800 CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTCGGCGATGCTTTACTTTG 1859
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1859 CGTTCTACTTCTTCACAAAGCTTCAGATCACCAAACTGGTCTCTGCGATGCTTTACTTTG 1918
Query 1860 GGTACATGCTCATCGCGTCTTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATG 1919
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GGTACATGCTCATCGCCTCCTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATG 1978
Query 1920 CTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATTAGAGGATAATGA 1979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1979 CTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATTAGAGGATA-TGA 2037
Query 1980 TGATCATCATGGC 1992
|||||||||||||
Sbjct 2038 TGATCATCATGGC 2050
> AT5G25100.2 | Symbols: | Endomembrane protein 70 protein family
| chr5:8648006-8651176 REVERSE LENGTH=2485
Length=2485
Score = 2097 bits (1135), Expect = 0.0
Identities = 1667/1920 (87%), Gaps = 51/1920 (3%)
Strand=Plus/Plus
Query 87 TGATTCTTCTGCTCTTC-ATCCATGGCGCTAACTCTTTCTATCTCCCAGGTGTTGCTCCT 145
|||||||||||||| || || |||| |||| ||||||| || || || ||||||||||||
Sbjct 208 TGATTCTTCTGCTC-TCTATTCATGTCGCTCACTCTTTTTACCTTCCTGGTGTTGCTCCT 266
Query 146 CAGGATTTCGAAAAGG-GT-GA-T---G-AGC--T--GA-A-G--GTGAAAGTG-AA-T- 187
|||||||||||||||| | | | | ||| | || | | |||||||| || |
Sbjct 267 CAGGATTTCGAAAAGGATTCAATTAGCGAAGCAATCGGAGATGAATTGAAAGTGAAAGTA 326
Query 188 -A-AA-TTAACTTCCATAAAGACTCAGCTTCCATACTCCTATTACTCCCTTCCTTTTTGT 244
| || || || || |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 327 AACAAGTTGACATCTATAAAGACTCAGCTTCCATATTCGTATTACTCTCTTCCTTTTTGT 386
Query 245 CGTCCT-AGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTGACCG 303
|||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 387 CGTCCTAAG-AAGATTGTGGACAGTACTGAGAATCTTGGTGAAGTTCTTCGTGGTGACCG 445
Query 304 GATAGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTCTCTG 363
|| || ||||| || || |||||||||||||| ||||| |||||||| ||| ||||| |
Sbjct 446 AATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGG 505
Query 364 CCGGGTCACT-CTTGATGCAAAGACAGCAAAAGCTTTTAAAGAAAAGATCGATGATGAGT 422
|| || | | |||||||||||| | || ||||| |||||||| ||||| ||||||||||
Sbjct 506 TCGTGTTA-TGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGT 564
Query 423 ACCGGGTCAACATGATCCTCGACAACCTTCCTCTAGTTGTTCCAATCGAAAG-A--G-T- 477
| || || ||||||||||| || || ||||||||||| ||||| |||||||| | | |
Sbjct 565 ATCGAGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTGATC 624
Query 478 C-GACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCC 536
| | ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||
Sbjct 625 CGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGATATCATGTTGGTCTTAAAGGCC 684
Query 537 AATACGAGGGGAGCAAAGAGCAGAAGT-TCTTTATGCACAATCACTTGGCATTTACAGTC 595
| || || |||||||||||||| |||| | ||||||||||||||||||||||| || |||
Sbjct 685 AGTATGAAGGGAGCAAAGAGCAAAAGTAT-TTTATGCACAATCACTTGGCATTCACTGTC 743
Query 596 CGCTATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTCAAACCT 655
|| ||||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||
Sbjct 744 CGGTATCATAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCA 803
Query 656 TACAGTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACAACATGT 715
|||||||| |||||||| || |||||| | |||||||||||||||||| |||| || |||
Sbjct 804 TACAGTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCTGT 863
Query 716 GATCCTCATACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAA-AA 774
||||| || || || || ||||| |||||||| ||||||||||||||||| ||| || ||
Sbjct 864 GATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAA-AATAA 922
Query 775 GAAGGAGATTATCTTCACATATGATGTCGA-TTTCCAGGAAAGTGAAGTGAAGTGGGCAT 833
||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||| |
Sbjct 923 GAAAGAAATTATCTTCACATATGATGTTGACTTT-CAGGAAAGTGAAGTGAAGTGGGCGT 981
Query 834 CTAGATGGGATACTTATCTTCTT-ATGAGTGATAACCAAATTCACTGGTTCTCTATCGTC 892
||||||||||| |||||||| || ||||| || || |||||||||||||| ||||| |||
Sbjct 982 CTAGATGGGATGCTTATCTT-TTGATGAGCGACAATCAAATTCACTGGTTTTCTATTGTC 1040
Query 893 AATTCTCTGATGATCGTCCTATTCCTGTCTGGTATGGTGGCAATGATAATGCTGAGGACC 952
|| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct 1041 AACTCTCTTATGATCGTCCTCTTCCTCTCTGGTATGGTAGCGATGATTATGCTAAGGACC 1100
Query 953 CTTTACCGTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAG 1012
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1101 CTTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAG 1160
Query 1013 ACAGGATGGAAGCTTGTCCATGGTGATGTTTTCAGGCTTCCTA-CCAATTCTGATCTGCT 1071
|| || ||||| || |||||||||||||||||||||| ||| | ||||||| ||||| ||
Sbjct 1161 ACTGGGTGGAAACTCGTCCATGGTGATGTTTTCAGGCCTCC-AGCCAATTCAGATCTTCT 1219
Query 1072 CTGCGTTTACGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTT 1131
|||||| || ||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1220 CTGCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTT 1279
Query 1132 CGCCATGCTCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTT 1191
|||||||||||||||| | || |||||||| || || ||||| ||||| || |||||| |
Sbjct 1280 CGCCATGCTCGGATTTTTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCT 1339
Query 1192 GCTCTGGGTCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTT 1251
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1340 CCTCTGGGTCTTCATGGGACTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTT 1399
Query 1252 CAAAGGAACAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGT 1311
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 1400 CAAAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGT 1459
Query 1312 TTCAGCAATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCCGGGGCTGT 1371
||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1460 CTCAGCCATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAAAAATCATCCGGAGCTGT 1519
Query 1372 CCCCTTTGGGACAATGTTTGCCT-TGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCG 1430
|||||||| |||||||||| || ||||||||||||||||||| ||||| || ||||| |
Sbjct 1520 TCCCTTTGGAACAATGTTTG-CTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTG 1578
Query 1431 TCTTTGTTGGGGGTTACATCGGGTTCAAGAAGCCAGCAG-TTGATGACCCAGTGAAAACC 1489
||||||| || | |||| |||| |||||||||||| | | | |||||||| |||||||||
Sbjct 1579 TCTTTGTCGGCGCTTACCTCGGATTCAAGAAGCCA-CCGCTCGATGACCCCGTGAAAACC 1637
Query 1490 AACAAAATCCCGA-GGCAAATTCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAAT 1548
||||||||||| | | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1638 AACAAAATCCC-ACGTCAAATCCCGGAGCAAGCTTGGTACATGAACCCAATTTTCTCAAT 1696
Query 1549 CCTCATTGGAGGAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCAC 1608
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1697 CCTCATTGGAGGAATCTTACCGTTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCAC 1756
Query 1609 ATCCATCTGGCTCAATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAAT 1668
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1757 ATCCATCTGGCTCAACCAGTTCTACTACATCTTCGGTTTCCTCTTCCTCGTCTTTGTGAT 1816
Query 1669 CCTCATCGTGACTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGA 1728
||| || || || ||||||||||| ||| | || ||||||||||||||||||||||||||
Sbjct 1817 CCTTATGGTCACCTGCGCCGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGA 1876
Query 1729 GGACTACCTTTGGTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTT 1788
||||| || ||||||||||| ||||||||||| |||||||| || || |||| |||||
Sbjct 1877 AGACTATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGCTCTTCTGCGGTCTATCTCTT 1936
Query 1789 CCTCTACGCCA-CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTCGGCGA 1847
||||||||| | | ||||| |||||||||||||| ||||| || || || ||||| || |
Sbjct 1937 CCTCTACGC-AGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCAGCTA 1995
Query 1848 TGCTTTACTTTGGGTACATGCTCATCGCGTCTTACGCATTTTTTGTGCTCACAGGAACAA 1907
|||| |||||||| |||||||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 1996 TGCTCTACTTTGGATACATGCTCATCGCCTCTTACGCGTTTTTCGTGCTGACCGGAACAA 2055
Query 1908 TAGGGTTCTATGCTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATT 1967
| |||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 2056 TCGGGTTCTACGCTTGTCTCTGGTTCACAAGACTCATCTATTCCTCGGTAAAGATCGATT 2115
> AT1G55130.1 | Symbols: TMN6, AtTMN6 | Endomembrane protein 70
protein family | chr1:20569654-20572393 FORWARD LENGTH=2041
Length=2041
Score = 632 bits (342), Expect = 3e-180
Identities = 937/1216 (77%), Gaps = 74/1216 (6%)
Strand=Plus/Plus
Query 755 CCTCAAGAAGTTGAACAAAAG-AAGGAGATTATCTTCACATATGATGTCG-ATTTCCAGG 812
||||||||||| | | || | || || ||| | || ||||||||||||| ||| |||
Sbjct 700 CCTCAAGAAGTCG-AGGAAGGAAAAGAAATTGTGTTTACATATGATGTCGCCTTT-AAGG 757
Query 813 AAAGTG-AAGTGAAGTGGGCATCTAGATGGGATACTTATCTT-CTTATGAGTGATAACCA 870
| |||| | | || ||||| || | ||||| || || ||| ||||||| ||| | ||
Sbjct 758 AGAGTGTTA-TCAAATGGGCTTCGCGCTGGGACACATA-CTTGCTTATGAACGATGATCA 815
Query 871 AATTCACTGGTTCTCTATCGTCAATTCTCTGATGATCGTCCTATTCCTGTCTGGTATGGT 930
||| |||||||| || ||| | || || || ||||| ||||| ||||| ||||| |||||
Sbjct 816 AATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGT 875
Query 931 GGCAATGATAATGCTGAGGACCCTT-TAC-CGTGACATTTCACGA-TACAA-CGAGCTCG 986
|| ||||| ||| ||| || | || ||| | || |||||| | ||||| | ||||||
Sbjct 876 AGCGATGATCATGATGA-GAACTTTATACAAG-GATATTTCA-AACTACAATC-AGCTCG 931
Query 987 AGACTCAAGAAGAAGCTCAAGAAGAGACAGGATGGAAGCTTGTCCATGGTGATGT-TTTC 1045
|||| ||||| || ||||| ||||| || |||||||||||||| ||||| ||||| |||
Sbjct 932 AGACCCAAGACGAGGCTCAGGAAGAAACCGGATGGAAGCTTGTACATGGAGATGTCTTT- 990
Query 1046 AGG-CTTCCTACCAATTCT-GATCTGCTCTGCGTTTACGTTGGAACAGGGGTCCAG-TGT 1102
||| | || | || ||| | | | || || ||||| || || ||||| || ||| | |
Sbjct 991 AGGAC-GCCCATGAACTCTGGGT-TACTGTGTGTTTATGTCGGCACAGGTGTTCAGAT-T 1047
Query 1103 CTAGGCATGGTA-T-TTGTCACAATGATCTTCGCCA-TGCTCGGATTTC-TCTCCCCTTC 1158
| || || | | | |||| ||||||||||| | || |||| || ||| | || || ||
Sbjct 1048 TTCGGTAT-G-ACTCTTGTGACAATGATCTTTG-CATTGCT-GGGCTTCTTATCTCCATC 1103
Query 1159 CAATC-GGGGTGGTCTGATGACTGCAAT-GCTCTTGC-TCTGGGTCTTCATGGGAC-TCT 1214
||| | | || || || | |||||| || | || | | | ||||| |||||||| | | |
Sbjct 1104 CAA-CAGAGGAGGGCTCACGACTGCCATGGTTC-T-CTTATGGGTATTCATGGG-CATAT 1159
Query 1215 TTGCTGGTTACGCCTCTTCACGTC-TCTACAAAATGTTCAAA-GGAACAGAGTGGAAGAG 1272
||||||||||| | ||||| |||| || |||||||||||||| |||| |||||||| ||
Sbjct 1160 TTGCTGGTTACTCATCTTCTCGTCTTC-ACAAAATGTTCAAAGGGAA-TGAGTGGAAAAG 1217
Query 1273 AATC-GCTTTCAGAACAGCCTTCTTGTTT-CCTGCAGTTGT-TTCAGCAATCTTCTTTGT 1329
|||| ||| || || || ||| ||||| || | | | | ||| || |||||||| ||
Sbjct 1218 AATCACCTTGAAG-ACTGCATTCATGTTTCCCGGTA-TACTCTTC-GCGATCTTCTTCGT 1274
Query 1330 CCTAAACGCTCTCATCTGGGGACAGAA-G-TCATCCGGGGCTGTCCCCTTTGGGACAATG 1387
|| ||| | ||||| ||||| |||| | ||||| || || | |||||| | ||||||
Sbjct 1275 TCTCAACACACTCATATGGGG--AGAACGATCATCTGGAGCCATTCCCTTTAGTACAATG 1332
Query 1388 TTTGCCT-TGATCT-TCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTGGGGGTT 1445
|||| || || ||| | ||||||||||| ||||| || || || ||||| |||| | |
Sbjct 1333 TTTG-CTCTGGTCTGT-CTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATTGGTAGCT 1390
Query 1446 ACATCGGGT-TCAAGAAGCCAGCAGTTGATGACCCAGTGAAAACCAACAAAATCCCGAGG 1504
|| || ||| ||| || |||||| | || || ||||| ||||| ||||| ||||||||
Sbjct 1391 ACCTC-GGTCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAGATCCCGAGA 1449
Query 1505 CAAATTCCAGAGCAAGCTTGGTACATG-AACC-CGGTTTTCTCAATCCTCATTGGAGGAA 1562
||| | ||||||||| ||||||||||| |||| ||||||| | || || |||||||| |
Sbjct 1450 CAAGTACCAGAGCAACCTTGGTACATGAAACCTGGGTTTTC-C-ATACTAATTGGAGGCA 1507
Query 1563 T-CTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGCTC 1621
| ||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1508 TCCTT-CCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATCTGGCTC 1566
Query 1622 AATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTT-TGTAATCCTCATCGTGAC 1680
||||| |||||||||||||| || ||||||||| |||| || | | ||| | || |||||
Sbjct 1567 AATCAATTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCT-TGATCTTGATTGTGAC 1625
Query 1681 TTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTTG 1740
||||| ||||| || | || ||||||||||| ||||| |||||||| |||||| |||
Sbjct 1626 CTGCGCAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTACAATTG 1685
Query 1741 GTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTACGCCA- 1799
||| |||||| | |||||||||||||||||||| | || ||||||||||||||| ||
Sbjct 1686 GTGTTGGAGAGCATACCTCACATCAGGCTCATCTTCACTTTACCTCTTCCTCTACTCCGT 1745
Query 1800 CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTC-GGCGATGCTTTACTTT 1858
| ||||||||||||||||||||| |||| | |||||||| || || | |||| |||||
Sbjct 1746 C-TTCTACTTCTTCACAAAGCTTGAGATCTCAAAACTGGTATCAGGAG-TGCTCTACTTC 1803
Query 1859 GGGTACATGCTCATCG-CGTCTTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTA 1917
||||||||| |||| | |||||| | ||||| ||||| || || |||| || |||||
Sbjct 1804 GGGTACATGATCATTATC-TCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTCTA 1862
Query 1918 TGCTTGTCTCTGGTTC 1933
|| ||| | ||||||
Sbjct 1863 CGCATGTTTGTGGTTC 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5