BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940561
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10910.1 | Symbols: | mraW methylase family protein | chr5:... 2185 0.0
> AT5G10910.1 | Symbols: | mraW methylase family protein | chr5:3439553-3441582
FORWARD LENGTH=1405
Length=1405
Score = 2185 bits (1183), Expect = 0.0
Identities = 1293/1347 (96%), Gaps = 4/1347 (0%)
Strand=Plus/Plus
Query 1 GCATGAGAAGAAGAAGC-TTAAATGGCGGGAGTGATTAGGGCTAAGCAGCTGTTTCTATG 59
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 14 GCATGAGAAGAAGAAGCTTTTAATGGCGGGAGTGATTAGGGCTAAGCAGCTGTTTCTATG 73
Query 60 CTCGTCGATTCTCTCGAGCAACAACAATAAGGTTTTATTACGCATTCCTCGGCGTAGTAT 119
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 74 CTCGTCGATTCTCTCGAGCAACAACAATAAGGTTCTATCACGCCTTCCTCGGCGTAGTAT 133
Query 120 CAATGTAATTGCCGGAAATCTCAATTCGAGCgagacgaagaagaaggagaaagagaagag 179
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 134 CAATGTAATTGCGGGAAATCTCAATTCGAGCGAGACTAAGAAGAAGGAGAAAGAGAAGAG 193
Query 180 gaagaggaggaaagagaTTGAGGTGGCAAAAGCTACAGCGGAAGCAGTGGTGAATAAGGA 239
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 194 GAAGAGGAGGAAAGAGATTGAGGTGGAAAAAGCTACTGCGGAAGCAGTGGTCAATAAGGA 253
Query 240 AAAGAGAAGAACACGGTCGAGCAGAGAGTATGAAATCGCCGACGGTGACGAAGTTCCGTC 299
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 254 AAAGAGAAGGACACGGTCGAGCAGAGGGTATGAACTCGCCGACGGTGACGAAGTTCCGTC 313
Query 300 CTCACATGTGCCTGTGATGCTCGGAGAAGTTCTTGACATTTTCTCTTCCGTTCGCTTGCG 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 314 CTCACATGTGCCTGTGATGCTCGGAGAGGTTCTTGACATTTTCTCTTCCGTTCGCTTGCG 373
Query 360 AAGCTTCGTTGATTGTACTCTTGGCGCTGCTGGTCACTCTTCTTCTATTATTCAAAGCCA 419
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 374 AAGTTTCGTTGATTGTACTCTTGGCGCAGCTGGTCACTCTTCTTCTATCATTCAAAGCCA 433
Query 420 CTCTGAATTGAAGAATTTTGTTGGAATGGATGTTGATCCTGTGGCAAGGAAACTGGGTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 434 CTCTGAATTGAAGAATTTTGTTGGAATGGATGTTGATCCTGTGGCAAGGAAACTGGGACA 493
Query 480 CTTTCATATTGATTCTCTCATGCATCCAACTTTGAAGGCTTCTATTGTGTTGAAGAACTT 539
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 494 CTTTCATATTGATTCGCTCATGCATCCAACTTTGAAGGCTTCTATAGTGTTGAAGAACTT 553
Query 540 CAAATACATCAAATCTGTGGTTGCTGATACGCAACCGGAATTGTTAGATGTAGGTGTTGA 599
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 554 CAAATACATCAAATCTGTGATTGCTGATACGCAACCGGAGTTGTTAGATGTAGGTGTTGA 613
Query 600 TGGTATTCTTATGGACCTGGGAATGTCATCTATGCAGGTAAACAATCCTGAAAGAGGGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TGGTATTCTTATGGACCTGGGAATGTCATCTATGCAGGTAAACAATCCTGAAAGAGGGTT 673
Query 660 TAGCGTTCTTCAAGAGGGACCTCTTGATATGCGAATGGATCCTCAGGCAACTCTAACAGC 719
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 674 TAGTGTTCTTCAAGAGGGACCTCTTGATATGCGTATGGATCCTCAGGCGACTCTAACAGC 733
Query 720 AGAAGATATAGTGAATTCGTGGCCAGAATCTGAACTGGGAAGAGTTCTACGTGATTATGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 734 AGAAGATATAGTGAATTCGTGGCCAGAATCTGAACTGGGAAGAGTTCTACGGGATTATGG 793
Query 780 CGAAGAAAGCAATTGGCATTTACTTCAAACTAGAATTGTTAAGGCTCGACTTAATGGCGG 839
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 794 CGAAGAAAGCAATTGGTATTTACTTCAAAATAGAATTGTTAAGGCTCGACTTAATGGCGG 853
Query 840 GTTACATTCTACTGGTGAACTGGTGGATCTCATTCGGGGTATGTCACCAGCAAGCAGAGG 899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 854 GTTACATTCTACTGGTGAACTGGTGGATCTCATTCGGGGTACGTCACCAGCAAGCAGAGG 913
Query 900 AGGCAGACAAGGTTGGATAAAGACAGCAACACGTGTGTTTCAAGGCCTAAGGATTGCAGT 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AGGCAGACAAGGCTGGATAAAGACAGCAACACGTGTGTTTCAAGGCCTAAGGATTGCAGT 973
Query 960 GAACGACGAACTCAAGACGCTACAAAACTCTCTCTACTCATCGTTCGATGTTCTCGGTCC 1019
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||
Sbjct 974 GAACGACGAACTCAAGACACTACAAAACTCACTCTACTCATCATTCGATGTTCTCGCTCC 1033
Query 1020 AGGTGGGAGACTAGCAGTCATTTCCTTCCACAGTCTGGAGGATCGAGTTGTAAAACAAAC 1079
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1034 AGGTGGGAGACTAGCAGTTATCTCCTTTCACAGTCTGGAGGATCGGGTTGTAAAACAAAC 1093
Query 1080 ATTCCTCGACATCTTAGGGTTTCAAAGAGAAGAGATAAACGGAGAGGGAAGTAGTGTGAA 1139
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1094 GTTCCTCGACATCTTAGGGTTTCAAAGAGAAGAGATCAACGGAGAGGGAAGTAGTGTAAA 1153
Query 1140 ACCAGAAAGGCAAATCGAAGAAGGAGTAGAGAAGGAATTAAAAGAGAAAGAAGACTGGAT 1199
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1154 ACCGGAAAGGCAAATCGAAGAAAGAGTAGAGAAGGAATTAAAAGAGAAAGAAGAGTGGAT 1213
Query 1200 CAAACAAACGGTAATAGGGTCGAAAGGAGTAATACTGACAAAGAGACCAATAACACCTTC 1259
|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CAAACAGACAGTAATAGCGTCGAAAGGAGTAATACTGACAAAGAGACCAATAACACCTTC 1273
Query 1260 AGAGGAAGAGGAGAGACTCAATCGCAGAGCAAGGAGTGCTAAGTTAAGAGTGATTCAGAA 1319
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1274 AGAGGAAGAGGAAAGACTGAATCGCAGAGCAAGAAGTGCTAAGTTAAGAGTGATTCAGAA 1333
Query 1320 GTTGTGATTGCTGCTTTATGAAATGTT 1346
||||||||| || || ||||||||||
Sbjct 1334 GTTGTGATTACT--TT-ATGAAATGTT 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5